Sub-family 
- Id
- ORTHO006505
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM000079
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (1 gene)
- ath
- Arabidopsis thaliana (1 gene)
- bdi
- Brachypodium distachyon (1 gene)
- cpa
- Carica papaya (1 gene)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (5 genes)
- lja
- Lotus japonicus (1 gene)
- mdo
- Malus domestica (3 genes)
- mes
- Manihot esculenta (1 gene)
- mtr
- Medicago truncatula (1 gene)
- osa
- Oryza sativa ssp. japonica (1 gene)
- osaindica
- Oryza sativa ssp. indica (1 gene)
- ptr
- Populus trichocarpa (2 genes)
- sbi
- Sorghum bicolor (1 gene)
- tca
- Theobroma cacao (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (1 gene)
The gene family ORTHO006505 has 24 genes in 17 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : ORTHO006505
Page 1 of 2, showing 20 records out of 24 total, starting on record 1, ending on 20
gene_id | species | description | comment | strand | chr | outlier |
---|---|---|---|---|---|---|
AL4G27760 | aly | name=fgenesh2_kg.4__2205__AT2G40830.1;pid=483145;prot=eq;tid=483145 | + | scaffold_4 | No | |
AT2G40830 | ath | Encodes a putative RING-H2 finger protein RHC1a.;RING-H2 finger C1A | transcript=eq;prot=eq; | + | 2 | No |
BD1G62350 | bdi | RING, subfamily zinc finger, C3HC4 type domain containing protein | pid=Bradi1g62350.1;tid=Bradi1g62350.1;GeneName=Bradi1g62350;transcript=eq;prot=eq | + | Bd1 | No |
CP00039G00040 | cpa | name=evm.TU.supercontig_39.4;pid=evm.TU.supercontig_39.4;prot=eq;transcript=eq | + | supercontig_39 | No | |
FV2G38790 | fve | RING finger protein 126 (probable) | transcript=eq;prot=eq;pid=gene08499 | - | LG2 | No |
GM00G00075 | gma | 24 | pid=16242669;transcript=eq;prot=eq;name=Glyma0024s00230.2 | - | scaffold_24 | No |
GM00G00080 | gma | 24 | pid=16242668;transcript=eq;prot=eq;name=Glyma0024s00230.1 | - | scaffold_24 | No |
GM02G22760 | gma | 02 | pid=16248541;transcript=eq;prot=eq;name=Glyma02g22760.1 | - | Gm02 | No |
GM02G44470 | gma | 02 | pid=16250153;transcript=eq;prot=eq;name=Glyma02g44470.1 | + | Gm02 | No |
GM14G04340 | gma | 14 | pid=16294323;transcript=eq;prot=eq;name=Glyma14g04340.1 | - | Gm14 | No |
LJ0G461260 | lja | partial;prot=eq;transcript=eq;scaffold=LjT39M07;name=LjT39M07.160.nd | - | chr0 | No | |
MD00G385900 | mdo | transcript=eq;prot=eq;pid=MDP0000686485;tid=MDP0000686485;contig=MDC017460.233 | + | MDC017460.233 | No | |
MD09G018630 | mdo | transcript=eq;prot=eq;pid=MDP0000252092;tid=MDP0000252092;contig=MDC017460.166 | - | 9 | No | |
MD17G015090 | mdo | transcript=eq;prot=eq;pid=MDP0000919900;tid=MDP0000919900;contig=MDC025925.30 | - | 17 | No | |
ME04050G00010 | mes | PACid=17993768;RNAname=cassava4.1_012645m;GeneName=cassava4.1_012645m.g;transcript=eq;prot=eq | - | scaffold04050 | No | |
MT5G088720 | mtr | Thioredoxin-related protein (Fragment) (AHRD V1 **-- B3VWL4_POPTN); contains Interpro domain(s) IPR001841 Zinc finger, RING-type | transcript=eq;prot=eq;pid=Medtr5g088720.1; | + | 5 | No |
OS03G22830 | osa | zinc finger, C3HC4 type domain containing protein, expressed | transcript=eq;prot=eq; | - | 3 | No |
OSINDICA_03G22030 | osaindica | source=BGI China;type=FgeneSH; | transcript=eq;prot=eq;name=OsIFCC006501; | - | Chr03 | No |
PT06G02880 | ptr | PACid=17311876;name=POPTR_0006s03070;alias=pt018255m,grail3.0024018502,Pt-RHC1.2; | transcript=eq;prot=eq;protein_id=17311876; | - | scaffold_6 | No |
PT16G02720 | ptr | PACid=17324352;name=POPTR_0016s02910;alias=pt003274m,estExt_Genewise1_v1.C_LG_XVI1068,Pt-RHC1.1; | transcript=eq;prot=eq;protein_id=17324352; | - | scaffold_16 | No |