Sub-family  

Parent family
HOM005366
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO006470 has 24 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 24 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G04670 aly name=fgenesh2_kg.4__360__AT2G24440.1;pid=481300;prot=eq;tid=481300 + scaffold_4 No
AL7G10230 aly name=scaffold_701076.1;pid=913334;prot=eq;tid=944847 - scaffold_7 No
AT2G24440 ath selenium binding; FUNCTIONS IN: selenium binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Selenoprotein, Rdx type (InterPro:IPR011893); BEST Arabidopsis thaliana protein match is: selenium binding (TAIR:AT4G31360.1); Has 1421 Blast hits to 981 proteins in 155 species: Archae - 2; Bacteria - 33; Metazoa - 566; Fungi - 103; Plants - 97; Viruses - 1; Other Eukaryotes - 619 (source: NCBI BLink).;selenium binding transcript=eq;prot=eq; + 2 No
AT4G31360 ath selenium binding; FUNCTIONS IN: selenium binding; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Selenoprotein, Rdx type (InterPro:IPR011893); BEST Arabidopsis thaliana protein match is: selenium binding (TAIR:AT2G24440.1); Has 221 Blast hits to 197 proteins in 65 species: Archae - 0; Bacteria - 10; Metazoa - 93; Fungi - 17; Plants - 58; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).;selenium binding transcript=eq;prot=eq; + 4 No
BD1G00247 bdi pid=Bradi1g00247.1;tid=Bradi1g00247.1;GeneName=Bradi1g00247;transcript=eq;prot=eq - Bd1 No
BD4G09320 bdi pid=Bradi4g09320.1;tid=Bradi4g09320.1;GeneName=Bradi4g09320;transcript=eq;prot=eq - Bd4 No
BD4G09610 bdi pid=Bradi4g09610.1;tid=Bradi4g09610.1;GeneName=Bradi4g09610;transcript=eq;prot=eq + Bd4 No
CP00244G00120 cpa name=evm.TU.supercontig_244.12;pid=evm.TU.supercontig_244.12;prot=eq;transcript=eq + supercontig_244 No
CR02G10160 cre name=ALO_fgenesh2_pg.C_scaffold_79000012;pid=196049;prot=eq;tid=196049;transcript=eq - chromosome_2 No
GM14G17190 gma 14 pid=16295610;transcript=eq;prot=eq;name=Glyma14g17190.1 + Gm14 No
GM17G29690 gma 17 pid=16306594;transcript=eq;prot=eq;name=Glyma17g29690.1 + Gm17 No
LJ5G008460 lja partial;prot=eq;transcript=eq;scaffold=CM0072;name=chr5.CM0072.270.nd - chr5 No
MD08G014210 mdo transcript=eq;prot=eq;pid=MDP0000533069;tid=MDP0000533069;contig=MDC006155.85 + 8 No
ME03049G01040 mes PACid=17959905;RNAname=cassava4.1_017736m;GeneName=cassava4.1_017736m.g;transcript=eq;prot=eq + scaffold03049 No
MRCC299_14G00520 mrcc299 name=MAE_fgenesh2_pg.C_Chr_14000034;pid=113704;prot=eq;tid=113704;transcript=eq + Chr_14 No
OS11G47770 osa selT%2FselW%2FselH selenoprotein domain containing protein, expressed transcript=eq;prot=eq; + 11 No
OSINDICA_11G34120 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC036088; + Chr11 No
PP00259G00170 ppa NULL name=e_gw1.259.50.1,pid=147446,prot=eq,tid=147446 + scaffold_259 No
PT18G03610 ptr PACid=17305310;name=POPTR_0018s03800;alias=pt009040m,estExt_fgenesh4_pg.C_1930010; transcript=eq;prot=eq;protein_id=17305310; - scaffold_18 No
RC28226G00120 rco name=28226.m000842;gene=28226.t000012;note=28226.t000012;transcript=eq;prot=eq - 28226 No
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