Sub-family  

Parent family
HOM001647
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO006426 has 24 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 24 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G15870 aly name=fgenesh1_pm.C_scaffold_3001299;pid=318283;prot=eq;tid=318283 + scaffold_3 No
AT3G15080 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1777 Blast hits to 1777 proteins in 250 species: Archae - 0; Bacteria - 24; Metazoa - 732; Fungi - 619; Plants - 217; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; + 3 No
BD3G35110 bdi single-stranded DNA specific 3'-5' exodeoxyribonuclease activity (Blast2GO) pid=Bradi3g35110.1;tid=Bradi3g35110.1;GeneName=Bradi3g35110;transcript=eq;prot=eq + Bd3 No
CP00080G00900 cpa name=evm.TU.supercontig_80.90;pid=evm.TU.supercontig_80.90;prot=eq;transcript=eq + supercontig_80 No
CR11G02730 cre name=e_gwW.33.46.1;pid=120367;prot=eq;tid=120367;transcript=eq - chromosome_11 No
FV3G17830 fve RNA exonuclease 4 (probable) transcript=eq;prot=eq;pid=gene27203 + LG3 No
GM12G35630 gma 12 pid=16288998;transcript=eq;prot=eq;name=Glyma12g35630.1 - Gm12 No
GM13G34800 gma 13 pid=16292637;transcript=eq;prot=eq;name=Glyma13g34800.1 + Gm13 No
LJ0G104850 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_033499;name=LjSGA_033499.1 + LjSGA_033499 No
MD03G020370 mdo transcript=eq;prot=eq;pid=MDP0000221920;tid=MDP0000221920;contig=MDC019706.264 + 3 No
ME06611G00110 mes PACid=17987647;RNAname=cassava4.1_014690m;GeneName=cassava4.1_014690m.g;transcript=eq;prot=eq + scaffold06611 No
MRCC299_04G03110 mrcc299 name=e_gw2.04.446.1;pid=80526;prot=eq;tid=80526;transcript=eq + Chr_04 No
OL03G01140 olu NULL name=gwEuk.3.509.1,pid=6857,prot=eq,tid=6857 + Chr_3 No
OS08G28980 osa exonuclease, putative, expressed transcript=eq;prot=eq; - 8 No
OT03G01110 ota Xpmc2 protein (ISS); name=OT03G01110;protein_id=CAL52763.1;prot=eq + chrom03 No
PP00199G00700 ppa NULL name=e_gw1.199.62.1,pid=143178,prot=eq,tid=143178 - scaffold_199 No
PT01G37490 ptr PACid=17303040;name=POPTR_0001s38250;alias=pt039673m,estExt_fgenesh4_pg.C_LG_I2922; transcript=eq;prot=eq;protein_id=17303040; - scaffold_1 No
RC30209G00150 rco name=30209.m001516;gene=30209.t000015;note=30209.t000015;transcript=eq;prot=eq - 30209 No
SB07G019190 sbi 7 prot=eq;pid=5058679;tid=5058679 - chr_7 No
SM00002G01230 smo proteinId=79010;transcriptId=79010;name=e_gw1.2.1446.1;transcript=eq;prot=eq - scaffold_2 No
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