Sub-family  

Parent family
HOM001055
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO006203 has 24 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 24 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G06410 aly name=fgenesh2_kg.1__663__AT1G06870.1;pid=470709;prot=eq;tid=470709 + scaffold_1 No
AL4G15080 aly name=fgenesh2_kg.4__1016__AT2G30440.1;pid=481956;prot=eq;tid=481956 + scaffold_4 No
AT1G06870 ath Peptidase S24/S26A/S26B/S26C family protein; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain (InterPro:IPR011056), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I, conserved site (InterPro:IPR019758), Peptidase S26, conserved region (InterPro:IPR019533), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A, signal peptidase I, serine active site (InterPro:IPR019756); BEST Arabidopsis thaliana protein match is: thylakoid processing peptide (TAIR:AT2G30440.1); Has 9578 Blast hits to 9341 proteins in 2371 species: Archae - 0; Bacteria - 7160; Metazoa - 214; Fungi - 105; Plants - 244; Viruses - 0; Other Eukaryotes - 1855 (source: NCBI BLink).;Peptidase S24/S26A/S26B/S26C family protein transcript=eq;prot=eq; + 1 No
AT2G30440 ath Encodes a thylakoidal processing peptidase that removes signal sequences from proteins synthesized in the cytoplasm and transported into the thylakoid lumen.;thylakoid processing peptide transcript=eq;prot=eq; + 2 No
BD4G31930 bdi serine-type peptidase activity (Blast2GO) pid=Bradi4g31930.1;tid=Bradi4g31930.1;GeneName=Bradi4g31930;transcript=eq;prot=eq - Bd4 No
CP00357G00080 cpa name=evm.TU.supercontig_357.8;pid=evm.TU.supercontig_357.8;prot=eq;transcript=eq + supercontig_357 No
FV2G51940 fve Probable thylakoidal processing peptidase 2, chloroplastic, Precursor (similar to) transcript=eq;prot=eq;pid=gene15048 + LG2 No
GM04G03840 gma 04 pid=16254765;transcript=eq;prot=eq;name=Glyma04g03840.1 + Gm04 No
GM06G03940 gma 06 pid=16261629;transcript=eq;prot=eq;name=Glyma06g03940.1 + Gm06 No
LJ1G018160 lja prot=eq;transcript=eq;scaffold=LjT39K06;name=chr1.LjT39K06.110.nd + chr1 No
MD00G362300 mdo transcript=eq;prot=eq;pid=MDP0000302855;tid=MDP0000302855;contig=MDC016281.40 + MDC016281.40 No
MD01G019540 mdo transcript=eq;prot=eq;pid=MDP0000881805;tid=MDP0000881805;contig=MDC019202.311 + 1 No
ME03104G00030 mes PACid=17987917;RNAname=cassava4.1_021475m;GeneName=cassava4.1_021475m.g;transcript=eq;prot=eq + scaffold03104 No
ME05162G00220 mes PACid=17964405;RNAname=cassava4.1_009706m;GeneName=cassava4.1_009706m.g;transcript=eq;prot=eq + scaffold05162 No
MT3G100960 mtr Thylakoidal processing peptidase 1, chloroplastic (AHRD V1 ***- O04348); contains Interpro domain(s) IPR000223 Peptidase S26A, signal peptidase I transcript=eq;prot=eq;pid=Medtr3g100960.1; + 3 No
OS09G28000 osa OsSigP6 %2D Putative Type I Signal Peptidase homologue%3B employs a putative Ser%2FLys catalytic dyad, expressed transcript=eq;prot=eq; - 9 No
OSINDICA_09G22310 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC028980; - Chr09 No
PT14G03380 ptr PACid=17343204;name=POPTR_0014s03570;alias=pt035724m; transcript=eq;prot=eq;protein_id=17343204; - scaffold_14 No
RC30170G02930 rco name=30170.m013939;gene=30170.t000351;note=30170.t000351;transcript=eq;prot=eq - 30170 No
SB02G026400 sbi 2 prot=eq;pid=5051270;tid=5051270 - chr_2 No
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