Sub-family  

Parent family
HOM002060
 
Keywords


Overview of gene family content




ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO006110 has 25 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 25 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AT2G28840 ath XB3 ortholog 1 in Arabidopsis thaliana (XBAT31); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 3 in Arabidopsis thaliana (TAIR:AT5G07270.1); Has 52906 Blast hits to 22710 proteins in 954 species: Archae - 64; Bacteria - 3597; Metazoa - 29466; Fungi - 4564; Plants - 3287; Viruses - 345; Other Eukaryotes - 11583 (source: NCBI BLink).;XB3 ortholog 1 in Arabidopsis thaliana transcript=eq;prot=eq; + 2 No
BD2G37100 bdi RING, subfamily ankyrin repeat domain-containing and RING finger protein, putative pid=Bradi2g37100.1;tid=Bradi2g37100.1;GeneName=Bradi2g37100;transcript=eq;prot=eq - Bd2 No
CP00081G01670 cpa name=evm.TU.supercontig_81.167;pid=evm.TU.supercontig_81.167;prot=eq;transcript=eq - supercontig_81 No
FV0G31070 fve Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A (Serine/threonine-protein phosphatase 6 regulatory subunit ARS-A) (probable) transcript=eq;prot=eq;pid=gene14115 - scf0513178 No
GM11G14900 gma 11 pid=16283930;transcript=eq;prot=eq;name=Glyma11g14900.1 - Gm11 No
GM12G06850 gma 12 pid=16286669;transcript=eq;prot=eq;name=Glyma12g06850.1 - Gm12 No
GM13G41040 gma 13 pid=16293357;transcript=eq;prot=eq;name=Glyma13g41040.1 + Gm13 No
GM15G04410 gma 15 pid=16297608;transcript=eq;prot=eq;name=Glyma15g04410.1 - Gm15 No
LJ0G173470 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_054664;name=LjSGA_054664.1 - LjSGA_054664 No
LJ3G013820 lja partial;prot=eq;transcript=eq;scaffold=LjT21L04;name=chr3.LjT21L04.10.nc - chr3 No
MD11G008110 mdo transcript=eq;prot=eq;pid=MDP0000137802;tid=MDP0000137802;contig=MDC005763.367 - 11 No
ME08393G00010 mes PACid=17977123;RNAname=cassava4.1_007651m;GeneName=cassava4.1_007651m.g;transcript=eq;prot=eq + scaffold08393 No
ME10045G00170 mes PACid=17980288;RNAname=cassava4.1_007655m;GeneName=cassava4.1_007655m.g;transcript=eq;prot=eq + scaffold10045 No
OS05G02130 osa ankyrin repeat domain%2Dcontaining protein 28, putative, expressed transcript=eq;prot=eq; - 5 No
OSINDICA_05G01040 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC019436; - Chr05 No
PT01G23810 ptr PACid=17302459;name=POPTR_0001s24570;alias=pt038585m,estExt_fgenesh4_pg.C_LG_I1758; transcript=eq;prot=eq;protein_id=17302459; + scaffold_1 No
PT09G03340 ptr PACid=17321272;name=POPTR_0009s03530;alias=pt004554m,eugene3.00091344; transcript=eq;prot=eq;protein_id=17321272; + scaffold_9 No
RC29520G00030 rco name=29520.m000089;gene=29520.t000003;note=29520.t000003;transcript=eq;prot=eq - 29520 No
SB09G001370 sbi 9 prot=eq;pid=5059971;tid=5059971 - chr_9 No
SM00007G03360 smo proteinId=86281;transcriptId=86281;name=e_gw1.7.252.1;transcript=eq;prot=eq - scaffold_7 No
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