Sub-family  

Parent family
HOM000634
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (3 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (2 genes)



The gene family ORTHO006014 has 25 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 25 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G26700 aly name=scaffold_702834.1;pid=915092;prot=eq;tid=946605 + scaffold_7 No
AT4G16520 ath autophagy 8f (ATG8F); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT3G60640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Ubiquitin-like superfamily protein transcript=eq;prot=eq; - 4 No
BD1G26400 bdi beta-tubulin binding, microtubule binding (Blast2GO) pid=Bradi1g26400.2;tid=Bradi1g26400.2;GeneName=Bradi1g26400;transcript=eq;prot=eq + Bd1 No
CP00049G01540 cpa name=evm.TU.supercontig_49.154;pid=evm.TU.supercontig_49.154;prot=eq;transcript=eq + supercontig_49 No
FV5G00080 fve Autophagy-related protein 8f (Protein autophagy 8f), Precursor (putative) transcript=eq;prot=eq;pid=gene31756 + LG5 No
FV7G11950 fve Autophagy-related protein 8f (Protein autophagy 8f), Precursor (similar to) transcript=eq;prot=eq;pid=gene03955 - LG7 No
GM05G04540 gma 05 pid=16258313;transcript=eq;prot=eq;name=Glyma05g04540.1 - Gm05 No
GM11G03460 gma 11 pid=16282542;transcript=eq;prot=eq;name=Glyma11g03460.1 - Gm11 No
GM17G14970 gma 17 pid=16305620;transcript=eq;prot=eq;name=Glyma17g14970.1 - Gm17 No
MD00G047050 mdo transcript=eq;prot=eq;pid=MDP0000265609;tid=MDP0000265609;contig=MDC001970.224 + MDC001970.224 No
MD00G516790 mdo transcript=eq;prot=eq;pid=MDP0000154699;tid=MDP0000154699;contig=MDC041559.10 - MDC041559.10 No
MD13G023260 mdo transcript=eq;prot=eq;pid=MDP0000302961;tid=MDP0000302961;contig=MDC016935.383 - 13 No
ME07035G01270 mes PACid=17977227;RNAname=cassava4.1_019332m;GeneName=cassava4.1_019332m.g;transcript=eq;prot=eq - scaffold07035 No
MT4G101090 mtr Autophagy-related protein 8f (AHRD V1 ***- Q8VYK7); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) transcript=eq;prot=eq;pid=Medtr4g101090.1; + 4 No
OS07G32800 osa autophagy%2Drelated protein, putative, expressed transcript=eq;prot=eq; - 7 No
OSINDICA_07G25670 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC023812; - Chr07 No
OT01G05530 ota Microtubule-associated anchor protein involved in autophagy and membrane trafficking (ISS); name=OT01G05530;protein_id=CAL50468.1;prot=eq + chrom01 No
PT00G13720 ptr PACid=17302117;name=POPTR_0021s00620;alias=pt002202m,estExt_fgenesh4_pg.C_LG_XI0039; transcript=eq;prot=eq;protein_id=17302117; - scaffold_21 No
PT03G10080 ptr PACid=17323174;name=POPTR_0003s11030;alias=pt024363m; transcript=eq;prot=eq;protein_id=17323174; + scaffold_3 No
RC29636G00370 rco name=29636.m000773;gene=29636.t000038;note=29636.t000038;transcript=eq;prot=eq - 29636 No
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