Sub-family  

Parent family
HOM002553
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO005830 has 25 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 25 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G14560 aly name=fgenesh2_kg.5__994__AT3G46210.3;pid=485002;prot=eq;tid=485002 - scaffold_5 No
AT3G46210 ath Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1); Has 6526 Blast hits to 6524 proteins in 2015 species: Archae - 242; Bacteria - 4366; Metazoa - 314; Fungi - 210; Plants - 230; Viruses - 0; Other Eukaryotes - 1164 (source: NCBI BLink).;Ribosomal protein S5 domain 2-like superfamily protein transcript=eq;prot=eq; - 3 No
BD1G01100 bdi 3'-5'-exoribonuclease activity (Blast2GO) pid=Bradi1g01100.1;tid=Bradi1g01100.1;GeneName=Bradi1g01100;transcript=eq;prot=eq - Bd1 No
CR14G03340 cre name=SZI_1_chlre3.17.58.3.11;pid=206570;prot=eq;tid=206577;transcript=eq + chromosome_14 No
FV2G35280 fve Exosome complex exonuclease RRP46 (probable) transcript=eq;prot=eq;pid=gene08834 + LG2 No
GM09G39680 gma 09 pid=16277782;transcript=eq;prot=eq;name=Glyma09g39680.1 - Gm09 No
GM17G18550 gma 17 pid=16306032;transcript=eq;prot=eq;name=Glyma17g18550.1 - Gm17 No
GM18G46510 gma 18 pid=16310636;transcript=eq;prot=eq;name=Glyma18g46510.1 + Gm18 No
LJ0G416850 lja prot=eq;transcript=eq;scaffold=LjT17O07;name=LjT17O07.100.nd - chr0 No
MD11G014370 mdo transcript=eq;prot=eq;pid=MDP0000205490;tid=MDP0000205490;contig=MDC017942.191 + 11 No
ME06871G00930 mes PACid=17989648;RNAname=cassava4.1_014947m;GeneName=cassava4.1_014947m.g;transcript=eq;prot=eq - scaffold06871 No
MRCC299_11G05520 mrcc299 name=gw2.11.420.1;pid=72388;prot=eq;tid=72388;transcript=eq + Chr_11 No
MT7G076910 mtr Exosome complex exonuclease RRP46 (AHRD V1 ***- Q9NQT4); contains Interpro domain(s) IPR001247 Exoribonuclease, phosphorolytic domain 1 transcript=eq;prot=eq;pid=Medtr7g076910.1; + 7 No
OL03G02140 olu NULL name=fgenesh1_pg.C_Chr_3000170,pid=14569,prot=eq,tid=14569 - Chr_3 No
OS03G63720 osa exosome complex exonuclease, putative, expressed transcript=eq;prot=eq; - 3 No
OSINDICA_03G60790 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC009024; - Chr03 No
OT03G02140 ota Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases (ISS); name=OT03G02140;protein_id=CAL52866.1;prot=eq - chrom03 No
PP00190G00620 ppa NULL name=estExt_gwp_gw1.C_1900041,pid=192949,prot=eq,tid=192949 - scaffold_190 No
PT18G00110 ptr PACid=17336686;name=POPTR_0018s00300;alias=pt008971m; transcript=eq;prot=eq;protein_id=17336686; + scaffold_18 No
RC29794G00750 rco name=29794.m003377;gene=29794.t000076;note=29794.t000076;transcript=eq;prot=eq - 29794 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier