Sub-family 
- Id
- ORTHO005792
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM002019
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (1 gene)
- ath
- Arabidopsis thaliana (1 gene)
- bdi
- Brachypodium distachyon (1 gene)
- cpa
- Carica papaya (1 gene)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (2 genes)
- mdo
- Malus domestica (2 genes)
- mes
- Manihot esculenta (1 gene)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (1 gene)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (1 gene)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (2 genes)
- ptr
- Populus trichocarpa (1 gene)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (1 gene)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (1 gene)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (1 gene)
The gene family ORTHO005792 has 25 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : ORTHO005792
Page 1 of 2, showing 20 records out of 25 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL4G30430 | aly | name=fgenesh2_kg.4__2465__AT2G43030.1;pid=483405;prot=eq;tid=483405 | + | scaffold_4 | No | |
| AT2G43030 | ath | Ribosomal protein L3 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L3 (InterPro:IPR000597), Ribosomal protein L3, bacterial/organelle-type (InterPro:IPR019927), Ribosomal protein L3, conserved site (InterPro:IPR019926), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: ribosomal protein L3 plastid (TAIR:AT3G17465.1); Has 8745 Blast hits to 8744 proteins in 2878 species: Archae - 254; Bacteria - 5494; Metazoa - 134; Fungi - 132; Plants - 92; Viruses - 0; Other Eukaryotes - 2639 (source: NCBI BLink).;Ribosomal protein L3 family protein | transcript=eq;prot=eq; | + | 2 | No |
| BD3G03270 | bdi | pid=Bradi3g03270.1;tid=Bradi3g03270.1;GeneName=Bradi3g03270;transcript=eq;prot=eq | - | Bd3 | No | |
| CP00073G00310 | cpa | name=evm.TU.supercontig_73.31;pid=evm.TU.supercontig_73.31;prot=eq;transcript=eq | - | supercontig_73 | No | |
| FV7G21830 | fve | 50S ribosomal protein L3-1, chloroplastic, Precursor (similar to) | transcript=eq;prot=eq;pid=gene03122 | - | LG7 | No |
| GM04G00360 | gma | 04 | pid=16254332;transcript=eq;prot=eq;name=Glyma04g00360.1 | - | Gm04 | No |
| GM06G00420 | gma | 06 | pid=16261213;transcript=eq;prot=eq;name=Glyma06g00420.1 | - | Gm06 | No |
| MD07G006710 | mdo | transcript=eq;prot=eq;pid=MDP0000475073;tid=MDP0000475073;contig=MDC020292.81 | + | 7 | No | |
| MD14G015100 | mdo | transcript=eq;prot=eq;pid=MDP0000287275;tid=MDP0000287275;contig=MDC010439.1042 | + | 14 | No | |
| ME03614G01630 | mes | PACid=17966002;RNAname=cassava4.1_013163m;GeneName=cassava4.1_013163m.g;transcript=eq;prot=eq | - | scaffold03614 | No | |
| MRCC299_11G04540 | mrcc299 | name=EuGene.1100010456;pid=62670;prot=eq;tid=62670;transcript=eq | + | Chr_11 | No | |
| MT3G118210 | mtr | 50S ribosomal protein L3, chloroplastic (Fragment) (AHRD V1 ***- O80360); contains Interpro domain(s) IPR019927 Ribosomal protein L3, bacterial/organelle-type | transcript=eq;prot=eq;pid=Medtr3g118210.1; | + | 3 | No |
| OL02G00260 | olu | NULL | name=e_gwEuk.2.671.1,pid=36377,prot=eq,tid=36377 | + | Chr_2 | No |
| OS02G04460 | osa | ribosomal protein L3, putative, expressed | transcript=eq;prot=eq; | - | 2 | No |
| OT02G06970 | ota | putative 50S ribosomal protein L3 (ISS); | name=OT02G06970;protein_id=CAL52572.1;prot=eq | - | chrom02 | No |
| PP00117G00440 | ppa | NULL | name=fgenesh1_pm.scaffold_117000004,pid=58629,prot=eq,tid=58629 | + | scaffold_117 | No |
| PP00144G00410 | ppa | NULL | name=fgenesh1_pg.scaffold_144000045,pid=86316,prot=eq,tid=86316 | + | scaffold_144 | No |
| PT13G06510 | ptr | PACid=17315061;name=POPTR_0013s06700;alias=pt031670m; | transcript=eq;prot=eq;protein_id=17315061; | + | scaffold_13 | No |
| RC30148G00050 | rco | name=30148.m001406;gene=30148.t000005;note=30148.t000005;transcript=eq;prot=eq | + | 30148 | No | |
| SB04G002980 | sbi | 4 | prot=eq;pid=5054643;tid=5054643 | - | chr_4 | No |