Sub-family  

Parent family
HOM002019
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO005792 has 25 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 25 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G30430 aly name=fgenesh2_kg.4__2465__AT2G43030.1;pid=483405;prot=eq;tid=483405 + scaffold_4 No
AT2G43030 ath Ribosomal protein L3 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L3 (InterPro:IPR000597), Ribosomal protein L3, bacterial/organelle-type (InterPro:IPR019927), Ribosomal protein L3, conserved site (InterPro:IPR019926), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: ribosomal protein L3 plastid (TAIR:AT3G17465.1); Has 8745 Blast hits to 8744 proteins in 2878 species: Archae - 254; Bacteria - 5494; Metazoa - 134; Fungi - 132; Plants - 92; Viruses - 0; Other Eukaryotes - 2639 (source: NCBI BLink).;Ribosomal protein L3 family protein transcript=eq;prot=eq; + 2 No
BD3G03270 bdi pid=Bradi3g03270.1;tid=Bradi3g03270.1;GeneName=Bradi3g03270;transcript=eq;prot=eq - Bd3 No
CP00073G00310 cpa name=evm.TU.supercontig_73.31;pid=evm.TU.supercontig_73.31;prot=eq;transcript=eq - supercontig_73 No
FV7G21830 fve 50S ribosomal protein L3-1, chloroplastic, Precursor (similar to) transcript=eq;prot=eq;pid=gene03122 - LG7 No
GM04G00360 gma 04 pid=16254332;transcript=eq;prot=eq;name=Glyma04g00360.1 - Gm04 No
GM06G00420 gma 06 pid=16261213;transcript=eq;prot=eq;name=Glyma06g00420.1 - Gm06 No
MD07G006710 mdo transcript=eq;prot=eq;pid=MDP0000475073;tid=MDP0000475073;contig=MDC020292.81 + 7 No
MD14G015100 mdo transcript=eq;prot=eq;pid=MDP0000287275;tid=MDP0000287275;contig=MDC010439.1042 + 14 No
ME03614G01630 mes PACid=17966002;RNAname=cassava4.1_013163m;GeneName=cassava4.1_013163m.g;transcript=eq;prot=eq - scaffold03614 No
MRCC299_11G04540 mrcc299 name=EuGene.1100010456;pid=62670;prot=eq;tid=62670;transcript=eq + Chr_11 No
MT3G118210 mtr 50S ribosomal protein L3, chloroplastic (Fragment) (AHRD V1 ***- O80360); contains Interpro domain(s) IPR019927 Ribosomal protein L3, bacterial/organelle-type transcript=eq;prot=eq;pid=Medtr3g118210.1; + 3 No
OL02G00260 olu NULL name=e_gwEuk.2.671.1,pid=36377,prot=eq,tid=36377 + Chr_2 No
OS02G04460 osa ribosomal protein L3, putative, expressed transcript=eq;prot=eq; - 2 No
OT02G06970 ota putative 50S ribosomal protein L3 (ISS); name=OT02G06970;protein_id=CAL52572.1;prot=eq - chrom02 No
PP00117G00440 ppa NULL name=fgenesh1_pm.scaffold_117000004,pid=58629,prot=eq,tid=58629 + scaffold_117 No
PP00144G00410 ppa NULL name=fgenesh1_pg.scaffold_144000045,pid=86316,prot=eq,tid=86316 + scaffold_144 No
PT13G06510 ptr PACid=17315061;name=POPTR_0013s06700;alias=pt031670m; transcript=eq;prot=eq;protein_id=17315061; + scaffold_13 No
RC30148G00050 rco name=30148.m001406;gene=30148.t000005;note=30148.t000005;transcript=eq;prot=eq + 30148 No
SB04G002980 sbi 4 prot=eq;pid=5054643;tid=5054643 - chr_4 No
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