Sub-family  

Parent family
HOM001545
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mes
Manihot esculenta (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family ORTHO005708 has 25 genes in 16 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 25 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G28650 aly name=fgenesh2_kg.3__2715__AT3G25070.1;pid=480014;prot=eq;tid=480014 + scaffold_3 No
AT3G25070 ath Encodes a member of the R protein complex and may represent a virulence target of type III pili effector proteins (virulence factors) from bacterial pathogens, which is 'guarded' by R protein complex (RPM1 and RPS2 proteins). RIN4 physically interacts with RPS2 and RPM1 in vivo. Bacterial avirulence (Avr) effectors AvrB, AvrRpm1, and AvrRpt2 induce a mobility shift in RIN4 and expression of AvrRpt2 induces rapid degradation of RIN4. RIN4 contains 2 sites for AvrRpt2 autocleavage, called RCS1 and RCS2. Overexpression of RIN4 inhibits multiple phenotypes associated with AvrRpt2 function and also inhibits PAMP-induced defense signaling. Attached to the plasma membrane at its carboxyl terminus. Cleaved by AvrRpt2 at two PxFGxW motifs, one releasing a large portion of RIN4 from the plasma membrane and both exposing amino-terminal residues that destabilized the carboxyl-terminal cleavage products by targeting them for N-end ubiquitylation and proteasomal degradation. Major virulence target of the TTSE HopF2Pto.;RPM1 interacting protein 4 transcript=eq;prot=eq; + 3 No
BD1G01730 bdi pid=Bradi1g01730.3;tid=Bradi1g01730.3;GeneName=Bradi1g01730;transcript=eq;prot=eq + Bd1 No
BD3G40950 bdi pid=Bradi3g40950.1;tid=Bradi3g40950.1;GeneName=Bradi3g40950;transcript=eq;prot=eq - Bd3 No
CP00083G00270 cpa name=evm.TU.supercontig_83.27;pid=evm.TU.supercontig_83.27;prot=eq;transcript=eq + supercontig_83 No
CP44943G00010 cpa name=evm.TU.contig_44943.1;pid=evm.TU.contig_44943.1;prot=eq;transcript=eq - contig_44943 No
GM03G19920 gma 03 pid=16251951;transcript=eq;prot=eq;name=Glyma03g19920.1 + Gm03 No
GM08G46400 gma 08 pid=16274031;transcript=eq;prot=eq;name=Glyma08g46400.1 - Gm08 No
GM16G12160 gma 16 pid=16302143;transcript=eq;prot=eq;name=Glyma16g12160.1 - Gm16 No
GM18G36000 gma 18 pid=16309739;transcript=eq;prot=eq;name=Glyma18g36000.1 + Gm18 No
LJ3G007990 lja prot=eq;transcript=eq;scaffold=CM0423;name=chr3.CM0423.340.nc - chr3 No
ME07528G00370 mes PACid=17971593;RNAname=cassava4.1_014063m;GeneName=cassava4.1_014063m.g;transcript=eq;prot=eq - scaffold07528 No
ME07827G00060 mes PACid=17978914;RNAname=cassava4.1_013976m;GeneName=cassava4.1_013976m.g;transcript=eq;prot=eq + scaffold07827 No
OS03G63140 osa nitrate%2Dinduced NOI protein, expressed transcript=eq;prot=eq; + 3 No
OSINDICA_03G60180 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC008970; + Chr03 No
PP00084G01290 ppa NULL name=estExt_fgenesh1_pm.C_840033,pid=106571,prot=eq,tid=106571 + scaffold_84 No
PP00209G00140 ppa NULL name=estExt_fgenesh1_pg.C_2090014,pid=169428,prot=eq,tid=169428 - scaffold_209 No
PT02G24300 ptr PACid=17343801;name=POPTR_0002s24680;alias=pt021263m,estExt_Genewise1_v1.C_LG_II0574,Pt-RIN4.1; transcript=eq;prot=eq;protein_id=17343801; + scaffold_2 No
RC30217G00180 rco name=30217.m000267;gene=30217.t000018;note=30217.t000018;transcript=eq;prot=eq - 30217 No
SB07G026510 sbi 7 prot=eq;pid=5044108;tid=5044108 + chr_7 No
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