Sub-family 
- Id
- ORTHO005708
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM001545
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (1 gene)
- ath
- Arabidopsis thaliana (1 gene)
- bdi
- Brachypodium distachyon (2 genes)
- cpa
- Carica papaya (2 genes)
- gma
- Glycine max (4 genes)
- lja
- Lotus japonicus (1 gene)
- mes
- Manihot esculenta (2 genes)
- osa
- Oryza sativa ssp. japonica (1 gene)
- osaindica
- Oryza sativa ssp. indica (1 gene)
- ppa
- Physcomitrella patens (2 genes)
- ptr
- Populus trichocarpa (1 gene)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (1 gene)
- tca
- Theobroma cacao (1 gene)
- vvi
- Vitis vinifera (2 genes)
- zma
- Zea mays (2 genes)
The gene family ORTHO005708 has 25 genes in 16 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.
Toolbox
Explore
- ...the local gene organization for homologous genes.
- ...the phylogenetic trees of this gene family.
- ...the expansion/depletion of species in this gene family.
View
- ...the multiple sequence alignment of the homologous gene family.
- ...the similarity heatmap of this gene family.
- ...the genome wide organization of this gene family.
- ...the functional annotation associated with this gene family.
Index of genes with 1 constraints:
- gene family : ORTHO005708
Page 1 of 2, showing 20 records out of 25 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL3G28650 | aly | name=fgenesh2_kg.3__2715__AT3G25070.1;pid=480014;prot=eq;tid=480014 | + | scaffold_3 | No | |
| AT3G25070 | ath | Encodes a member of the R protein complex and may represent a virulence target of type III pili effector proteins (virulence factors) from bacterial pathogens, which is 'guarded' by R protein complex (RPM1 and RPS2 proteins). RIN4 physically interacts with RPS2 and RPM1 in vivo. Bacterial avirulence (Avr) effectors AvrB, AvrRpm1, and AvrRpt2 induce a mobility shift in RIN4 and expression of AvrRpt2 induces rapid degradation of RIN4. RIN4 contains 2 sites for AvrRpt2 autocleavage, called RCS1 and RCS2. Overexpression of RIN4 inhibits multiple phenotypes associated with AvrRpt2 function and also inhibits PAMP-induced defense signaling. Attached to the plasma membrane at its carboxyl terminus. Cleaved by AvrRpt2 at two PxFGxW motifs, one releasing a large portion of RIN4 from the plasma membrane and both exposing amino-terminal residues that destabilized the carboxyl-terminal cleavage products by targeting them for N-end ubiquitylation and proteasomal degradation. Major virulence target of the TTSE HopF2Pto.;RPM1 interacting protein 4 | transcript=eq;prot=eq; | + | 3 | No |
| BD1G01730 | bdi | pid=Bradi1g01730.3;tid=Bradi1g01730.3;GeneName=Bradi1g01730;transcript=eq;prot=eq | + | Bd1 | No | |
| BD3G40950 | bdi | pid=Bradi3g40950.1;tid=Bradi3g40950.1;GeneName=Bradi3g40950;transcript=eq;prot=eq | - | Bd3 | No | |
| CP00083G00270 | cpa | name=evm.TU.supercontig_83.27;pid=evm.TU.supercontig_83.27;prot=eq;transcript=eq | + | supercontig_83 | No | |
| CP44943G00010 | cpa | name=evm.TU.contig_44943.1;pid=evm.TU.contig_44943.1;prot=eq;transcript=eq | - | contig_44943 | No | |
| GM03G19920 | gma | 03 | pid=16251951;transcript=eq;prot=eq;name=Glyma03g19920.1 | + | Gm03 | No |
| GM08G46400 | gma | 08 | pid=16274031;transcript=eq;prot=eq;name=Glyma08g46400.1 | - | Gm08 | No |
| GM16G12160 | gma | 16 | pid=16302143;transcript=eq;prot=eq;name=Glyma16g12160.1 | - | Gm16 | No |
| GM18G36000 | gma | 18 | pid=16309739;transcript=eq;prot=eq;name=Glyma18g36000.1 | + | Gm18 | No |
| LJ3G007990 | lja | prot=eq;transcript=eq;scaffold=CM0423;name=chr3.CM0423.340.nc | - | chr3 | No | |
| ME07528G00370 | mes | PACid=17971593;RNAname=cassava4.1_014063m;GeneName=cassava4.1_014063m.g;transcript=eq;prot=eq | - | scaffold07528 | No | |
| ME07827G00060 | mes | PACid=17978914;RNAname=cassava4.1_013976m;GeneName=cassava4.1_013976m.g;transcript=eq;prot=eq | + | scaffold07827 | No | |
| OS03G63140 | osa | nitrate%2Dinduced NOI protein, expressed | transcript=eq;prot=eq; | + | 3 | No |
| OSINDICA_03G60180 | osaindica | source=BGI China;type=FgeneSH; | transcript=eq;prot=eq;name=OsIFCC008970; | + | Chr03 | No |
| PP00084G01290 | ppa | NULL | name=estExt_fgenesh1_pm.C_840033,pid=106571,prot=eq,tid=106571 | + | scaffold_84 | No |
| PP00209G00140 | ppa | NULL | name=estExt_fgenesh1_pg.C_2090014,pid=169428,prot=eq,tid=169428 | - | scaffold_209 | No |
| PT02G24300 | ptr | PACid=17343801;name=POPTR_0002s24680;alias=pt021263m,estExt_Genewise1_v1.C_LG_II0574,Pt-RIN4.1; | transcript=eq;prot=eq;protein_id=17343801; | + | scaffold_2 | No |
| RC30217G00180 | rco | name=30217.m000267;gene=30217.t000018;note=30217.t000018;transcript=eq;prot=eq | - | 30217 | No | |
| SB07G026510 | sbi | 7 | prot=eq;pid=5044108;tid=5044108 | + | chr_7 | No |