Sub-family  

Parent family
HOM000634
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family ORTHO005665 has 25 genes in 16 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 25 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G06530 aly name=fgenesh2_kg.3__646__AT3G06420.1;pid=477945;prot=eq;tid=477945 - scaffold_3 No
AL3G16550 aly name=fgenesh2_kg.3__1708__AT3G15580.1;pid=479007;prot=eq;tid=479007 - scaffold_3 No
AT3G06420 ath autophagy 8h (ATG8H); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT3G15580.1); Has 1476 Blast hits to 1474 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 722; Fungi - 178; Plants - 301; Viruses - 3; Other Eukaryotes - 272 (source: NCBI BLink).;Ubiquitin-like superfamily protein transcript=eq;prot=eq; - 3 No
AT3G15580 ath Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition.;Ubiquitin-like superfamily protein transcript=eq;prot=eq; - 3 No
BD4G45390 bdi beta-tubulin binding, microtubule binding (Blast2GO) pid=Bradi4g45390.1;tid=Bradi4g45390.1;GeneName=Bradi4g45390;transcript=eq;prot=eq + Bd4 No
CP00067G00720 cpa name=evm.TU.supercontig_67.73;pid=evm.TU.supercontig_67.73;prot=eq;transcript=eq + supercontig_67 No
FV1G21760 fve Autophagy-related protein 8i (Protein autophagy 8i) (putative) transcript=eq;prot=eq;pid=gene24554 - LG1 No
FV4G19130 fve Autophagy-related protein 8h (Protein autophagy 8h) (putative) transcript=eq;prot=eq;pid=gene22975 + LG4 No
GM02G01180 gma 02 pid=16246576;transcript=eq;prot=eq;name=Glyma02g01180.1 + Gm02 No
GM10G01220 gma 10 pid=16278191;transcript=eq;prot=eq;name=Glyma10g01220.1 + Gm10 No
LJ5G019730 lja prot=eq;transcript=eq;scaffold=CM0158;name=chr5.CM0158.160.nc + chr5 No
MD00G145690 mdo transcript=eq;prot=eq;pid=MDP0000182267;tid=MDP0000182267;contig=MDC006261.317 + MDC006261.317 No
MD09G027030 mdo transcript=eq;prot=eq;pid=MDP0000143393;tid=MDP0000143393;contig=MDC021758.188 - 9 No
MD13G013600 mdo transcript=eq;prot=eq;pid=MDP0000339918;tid=MDP0000339918;contig=MDC009608.253 + 13 No
ME00080G00340 mes PACid=17964612;RNAname=cassava4.1_019158m;GeneName=cassava4.1_019158m.g;transcript=eq;prot=eq - scaffold00080 No
MT1G086310 mtr Autophagy-related protein 8h (AHRD V1 ***- Q8S925); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) transcript=eq;prot=eq;pid=Medtr1g086310.1; + 1 No
MT4G123760 mtr Autophagy-related protein 8 (AHRD V1 ***- A6P6J6_FAGES); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) transcript=eq;prot=eq;pid=Medtr4g123760.1; - 4 No
OS11G01010 osa autophagy%2Drelated protein 8D, putative, expressed transcript=eq;prot=eq; - 11 No
PT02G18840 ptr PACid=17323388;name=POPTR_0002s19030;alias=pt021924m,Pt-APG8.1,estExt_fgenesh4_pg.C_LG_II1864; transcript=eq;prot=eq;protein_id=17323388; + scaffold_2 No
PT08G09690 ptr PACid=17315629;name=POPTR_0008s09880;alias=pt028177m,estExt_Genewise1_v1.C_LG_VIII0142; transcript=eq;prot=eq;protein_id=17315629; + scaffold_8 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier