Sub-family 
- Id
- ORTHO005478
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM004284
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (1 gene)
- ath
- Arabidopsis thaliana (1 gene)
- bdi
- Brachypodium distachyon (1 gene)
- cpa
- Carica papaya (1 gene)
- cre
- Chlamydomonas reinhardtii (1 gene)
- gma
- Glycine max (2 genes)
- lja
- Lotus japonicus (1 gene)
- mdo
- Malus domestica (1 gene)
- mes
- Manihot esculenta (1 gene)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (2 genes)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (1 gene)
- osaindica
- Oryza sativa ssp. indica (1 gene)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (1 gene)
- ptr
- Populus trichocarpa (2 genes)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (1 gene)
- tca
- Theobroma cacao (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (1 gene)
The gene family ORTHO005478 has 25 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : ORTHO005478
Page 1 of 2, showing 20 records out of 25 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G09570 | aly | name=fgenesh2_kg.1__1039__AT1G09815.1;pid=471085;prot=eq;tid=471085 | + | scaffold_1 | No | |
| AT1G09815 | ath | polymerase delta 4 (POLD4); FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase delta, subunit 4 (InterPro:IPR007218); Has 212 Blast hits to 212 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 52; Fungi - 86; Plants - 65; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).;polymerase delta 4 | transcript=eq;prot=eq; | + | 1 | No |
| BD4G35390 | bdi | DNA-directed DNA polymerase activity (Blast2GO) | pid=Bradi4g35390.1;tid=Bradi4g35390.1;GeneName=Bradi4g35390;transcript=eq;prot=eq | + | Bd4 | No |
| CP00043G01380 | cpa | name=evm.TU.supercontig_43.138;pid=evm.TU.supercontig_43.138;prot=eq;transcript=eq | + | supercontig_43 | No | |
| CR06G09270 | cre | name=estExt_fgenesh2_kg.C_690017;pid=185774;prot=eq;tid=185774;transcript=eq | + | chromosome_6 | No | |
| GM05G25400 | gma | 05 | pid=16259574;transcript=eq;prot=eq;name=Glyma05g25400.1 | + | Gm05 | No |
| GM08G08420 | gma | 08 | pid=16270411;transcript=eq;prot=eq;name=Glyma08g08420.1 | + | Gm08 | No |
| LJ4G003910 | lja | prot=eq;transcript=eq;scaffold=CM0337;name=chr4.CM0337.20.nd | - | chr4 | No | |
| MD07G000010 | mdo | transcript=eq;prot=eq;pid=MDP0000212806;tid=MDP0000212806;contig=MDC015866.161 | - | 7 | No | |
| ME03614G01310 | mes | PACid=17965729;RNAname=cassava4.1_019170m;GeneName=cassava4.1_019170m.g;transcript=eq;prot=eq | + | scaffold03614 | No | |
| MRCC299_02G05730 | mrcc299 | name=fgenesh2_pg.C_Chr_02000237;pid=98861;prot=eq;tid=98861;transcript=eq | - | Chr_02 | No | |
| MT0G32690 | mtr | DNA polymerase delta subunit 4 (AHRD V1 *-** Q9HCU8); contains Interpro domain(s) IPR007218 DNA polymerase delta, subunit 4 | transcript=eq;prot=eq;pid=AC235662_11.1; | - | AC235662.8 | No |
| MT0G32720 | mtr | DNA polymerase delta subunit 4 family protein (AHRD V1 *-*- C5P6F7_COCP7); contains Interpro domain(s) IPR007218 DNA polymerase delta, subunit 4 | transcript=eq;prot=eq;pid=AC235662_14.1; | - | AC235662.8 | No |
| OL07G02650 | olu | NULL | name=eugene.0700010262,pid=32665,prot=eq,tid=32665 | + | Chr_7 | No |
| OS09G34850 | osa | POLD4A %2D Putative DNA polymerase delta complex subunit, expressed | transcript=eq;prot=eq; | - | 9 | No |
| OSINDICA_09G27650 | osaindica | source=BGI China;type=FgeneSH; | transcript=eq;prot=eq;name=OsIFCC029350; | - | Chr09 | No |
| OT07G02450 | ota | Polymerase (ISS); | name=OT07G02450;protein_id=CAL54518.1;prot=eq | + | chrom07 | No |
| PP00298G00180 | ppa | NULL | name=gw1.298.19.1,pid=8930,prot=eq,tid=8930 | - | scaffold_298 | No |
| PT13G07180 | ptr | PACid=17331327;name=POPTR_0013s07370;alias=pt031434m,eugene3.00130756; | transcript=eq;prot=eq;protein_id=17331327; | - | scaffold_13 | No |
| PT19G05790 | ptr | PACid=17330383;name=POPTR_0019s05980;alias=pt010544m,grail3.0065010101; | transcript=eq;prot=eq;protein_id=17330383; | + | scaffold_19 | No |