Sub-family  

Parent family
HOM004281
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO005462 has 25 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 25 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G05260 aly name=fgenesh2_kg.1__534__AT1G05730.1;pid=470580;prot=eq;tid=470580 + scaffold_1 No
AL4G16640 aly name=fgenesh2_kg.4__1155__AT2G31725.1;pid=482095;prot=eq;tid=482095 - scaffold_4 No
AT1G05730 ath Eukaryotic protein of unknown function (DUF842); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF842, eukaryotic (InterPro:IPR008560); BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF842) (TAIR:AT2G31725.1); Has 245 Blast hits to 245 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).;Eukaryotic protein of unknown function (DUF842) transcript=eq;prot=eq; + 1 No
AT2G31725 ath Eukaryotic protein of unknown function (DUF842); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF842, eukaryotic (InterPro:IPR008560); BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF842) (TAIR:AT1G05730.1); Has 259 Blast hits to 259 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).;Eukaryotic protein of unknown function (DUF842) transcript=eq;prot=eq; - 2 No
BD4G20800 bdi pid=Bradi4g20800.1;tid=Bradi4g20800.1;GeneName=Bradi4g20800;transcript=eq;prot=eq + Bd4 No
CP00009G03650 cpa name=evm.TU.supercontig_9.365;pid=evm.TU.supercontig_9.365;prot=eq;transcript=eq + supercontig_9 No
FV0G32430 fve Protein FAM136A (probable) transcript=eq;prot=eq;pid=gene14007 + scf0513178 No
GM02G06480 gma 02 pid=16247186;transcript=eq;prot=eq;name=Glyma02g06480.1 - Gm02 No
GM04G13180 gma 04 pid=16255807;transcript=eq;prot=eq;name=Glyma04g13180.1 - Gm04 No
GM06G47800 gma 06 pid=16265521;transcript=eq;prot=eq;name=Glyma06g47800.1 + Gm06 No
MD05G011340 mdo transcript=eq;prot=eq;pid=MDP0000379106;tid=MDP0000379106;contig=MDC003521.145 + 5 No
ME07947G00020 mes PACid=17972798;RNAname=cassava4.1_018415m;GeneName=cassava4.1_018415m.g;transcript=eq;prot=eq - scaffold07947 No
MT3G009130 mtr Protein FAM136A (AHRD V1 ***- Q6PBU0); contains Interpro domain(s) IPR008560 Protein of unknown function DUF842, eukaryotic transcript=eq;prot=eq;pid=Medtr3g009130.1; + 3 No
OS11G14990 osa expressed protein transcript=eq;prot=eq; - 11 No
OSINDICA_11G11490 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC034684; - Chr11 No
PP00071G00010 ppa NULL name=estExt_fgenesh2_pg.C_710001,pid=233071,prot=eq,tid=233071 + scaffold_71 No
PT13G12540 ptr PACid=17332592;name=POPTR_0013s13110;alias=pt031347m,estExt_fgenesh4_pm.C_1420022; transcript=eq;prot=eq;protein_id=17332592; - scaffold_13 No
RC29747G00220 rco name=29747.m001065;gene=29747.t000022;note=29747.t000022;transcript=eq;prot=eq + 29747 No
SB05G006580 sbi 5 prot=eq;pid=5039887;tid=5039887 + chr_5 No
SM00013G04850 smo proteinId=92880;transcriptId=92880;name=e_gw1.13.1032.1;transcript=eq;prot=eq - scaffold_13 No
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