Sub-family  

Parent family
HOM002223
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO005456 has 25 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 25 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G03370 aly name=fgenesh2_kg.1__333__AT1G04020.1;pid=470379;prot=eq;tid=470379 + scaffold_1 No
AT1G04020 ath Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein–protein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.;breast cancer associated RING 1 transcript=eq;prot=eq; + 1 No
BD5G15500 bdi BRAC1 pid=Bradi5g15500.1;tid=Bradi5g15500.1;GeneName=Bradi5g15500;Name=BdBRCA1A;transcript=eq;prot=eq - Bd5 No
CP00165G00430 cpa name=evm.TU.supercontig_165.43;pid=evm.TU.supercontig_165.43;prot=eq;transcript=eq + supercontig_165 No
CR16G04990 cre name=Chlre2_kg.scaffold_28000056;pid=149108;prot=eq;tid=149108;transcript=eq + chromosome_16 No
FV2G09870 fve Protein BREAST CANCER SUSCEPTIBILITY 1 homolog (AtBRCA1) (probable) transcript=eq;prot=eq;pid=gene08303 + LG2 No
GM19G35010 gma 19 pid=16313795;transcript=eq;prot=eq;name=Glyma19g35010.1 + Gm19 No
LJ3G027460 lja partial;prot=eq;transcript=eq;scaffold=CM0160;name=chr3.CM0160.940.nd - chr3 No
MD00G206550 mdo transcript=eq;prot=eq;pid=MDP0000124449;tid=MDP0000124449;contig=MDC008899.355 + MDC008899.355 No
MD05G013880 mdo transcript=eq;prot=eq;pid=MDP0000190587;tid=MDP0000190587;contig=MDC009053.293 + 5 No
MD10G013950 mdo transcript=eq;prot=eq;pid=MDP0000320861;tid=MDP0000320861;contig=MDC015606.185 - 10 No
ME07005G00070 mes PACid=17968811;RNAname=cassava4.1_002209m;GeneName=cassava4.1_002209m.g;transcript=eq;prot=eq - scaffold07005 No
ME09880G00610 mes PACid=17968340;RNAname=cassava4.1_002522m;GeneName=cassava4.1_002522m.g;transcript=eq;prot=eq - scaffold09880 No
MT7G098170 mtr PHD finger protein 11-like (AHRD V1 *--- Q8BVM9); contains Interpro domain(s) IPR001357 BRCT transcript=eq;prot=eq;pid=Medtr7g098170.1; + 7 No
OL05G00320 olu NULL name=estExt_fgenesh1_pg.C_Chr_50027,pid=24500,prot=eq,tid=24500 - Chr_5 No
OS04G43300 osa BRCA1 C Terminus domain containing protein, expressed transcript=eq;prot=eq; - 4 No
OSINDICA_04G35420 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC018163; - Chr04 No
OT05G00300 ota Transcription factor TCF20 (ISS); name=OT05G00300;protein_id=CAL53785.1;prot=eq - chrom05 No
PT02G25690 ptr PACid=17328689;name=POPTR_0002s26070;alias=pt020005m; transcript=eq;prot=eq;protein_id=17328689; - scaffold_2 No
RC29637G00410 rco name=29637.m000764;gene=29637.t000042;note=29637.t000042;transcript=eq;prot=eq - 29637 No
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