Sub-family  

Parent family
HOM001234
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (1 gene)



The gene family ORTHO005165 has 26 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 26 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G24440 aly name=fgenesh2_kg.5__1830__AT3G54380.1;pid=485838;prot=eq;tid=485838 - scaffold_5 No
AT3G54380 ath SAC3/GANP/Nin1/mts3/eIF-3 p25 family; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: SAC3/GANP/Nin1/mts3/eIF-3 p25 family (TAIR:AT3G06290.1); Has 539 Blast hits to 535 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 200; Plants - 96; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).;SAC3/GANP/Nin1/mts3/eIF-3 p25 family transcript=eq;prot=eq; - 3 No
BD1G62340 bdi pid=Bradi1g62340.1;tid=Bradi1g62340.1;GeneName=Bradi1g62340;transcript=eq;prot=eq - Bd1 No
CP00033G01360 cpa name=evm.TU.supercontig_33.136;pid=evm.TU.supercontig_33.136;prot=eq;transcript=eq - supercontig_33 No
FV7G01070 fve SAC3 family protein 1 (probable) transcript=eq;prot=eq;pid=gene00260 + LG7 No
GM13G25740 gma 13 pid=16291564;transcript=eq;prot=eq;name=Glyma13g25740.1 - Gm13 No
LJ3G017320 lja prot=eq;transcript=eq;scaffold=CM0005;name=chr3.CM0005.390.nc - chr3 No
MD02G025680 mdo transcript=eq;prot=eq;pid=MDP0000120067;tid=MDP0000120067;contig=MDC001986.172 - 2 No
ME10504G00060 mes PACid=17970198;RNAname=cassava4.1_007582m;GeneName=cassava4.1_007582m.g;transcript=ne;prot=eq + scaffold10504 No
MT8G042380 mtr 80 kDa MCM3-associated protein (AHRD V1 **-- O60318); contains Interpro domain(s) IPR005062 SAC3/GANP/Nin1/mts3/eIF-3 p25 transcript=eq;prot=eq;pid=Medtr8g042380.1; - 8 No
OS03G22870 osa SAC3%2FGANP family protein, putative, expressed transcript=eq;prot=eq; + 3 No
OSINDICA_03G22090 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC006502; + Chr03 No
PP00191G00090 ppa NULL name=e_gw1.191.34.1,pid=142391,prot=eq,tid=142391 + scaffold_191 No
PP00517G00070 ppa NULL name=estExt_fgenesh1_pg.C_5170007,pid=173629,prot=eq,tid=173629 + scaffold_517 No
PT01G07110 ptr PACid=17310030;name=POPTR_0001s07300;alias=pt038669m; transcript=eq;prot=eq;protein_id=17310030; + scaffold_1 No
RC29686G00410 rco name=29686.m000894;gene=29686.t000041;note=29686.t000041;transcript=eq;prot=eq - 29686 No
SB01G035300 sbi 1 prot=eq;pid=5029941;tid=5029941 - chr_1 No
TC10G012350 tca RNAname=Tc10_t012350;GeneName=Tc10_g012350;transcript=eq;prot=eq + Tc10 No
VV00G25410 vvi name=GSVIVG01004011001; transcript=eq;prot=eq;name=GSVIVG01004011001;pid=GSVIVG01004011001;tid=GSVIVT01004011001; - chr13_random No
VV00G25440 vvi name=GSVIVG01004016001; transcript=eq;prot=eq;name=GSVIVG01004016001;pid=GSVIVG01004016001;tid=GSVIVT01004016001; - chr13_random No
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