Sub-family  

Parent family
HOM001958
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO005150 has 26 genes in 21 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 26 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G17780 aly name=Al_scaffold_0005_1702;pid=866223;prot=eq;tid=897736 + scaffold_5 No
AL6G23490 aly name=fgenesh2_kg.6__2364__AT5G23690.1;pid=489230;prot=eq;tid=489230 + scaffold_6 No
AT3G48830 ath polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: polynucleotide adenylyltransferase activity, RNA binding, nucleotide binding, nucleic acid binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Poly A polymerase, head domain (InterPro:IPR002646), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 11594 Blast hits to 10901 proteins in 2648 species: Archae - 2; Bacteria - 6462; Metazoa - 1299; Fungi - 748; Plants - 674; Viruses - 8; Other Eukaryotes - 2401 (source: NCBI BLink).;polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein transcript=eq;prot=eq; + 3 No
AT5G23690 ath Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G48830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Polynucleotide adenylyltransferase family protein transcript=eq;prot=eq; + 5 No
BD5G08637 bdi pid=Bradi5g08637.1;tid=Bradi5g08637.1;GeneName=Bradi5g08637;transcript=eq;prot=eq + Bd5 No
FV0G09200 fve Poly(A) polymerase (PAP) (probable) transcript=eq;prot=eq;pid=gene06447 - scf0513158 No
GM04G37700 gma 04 pid=16257078;transcript=eq;prot=eq;name=Glyma04g37700.1 + Gm04 No
GM05G38470 gma 05 pid=16261158;transcript=eq;prot=eq;name=Glyma05g38470.1 + Gm05 No
GM08G01200 gma 08 pid=16269538;transcript=eq;prot=eq;name=Glyma08g01200.1 - Gm08 No
LJ4G031280 lja prot=eq;transcript=eq;scaffold=CM0175;name=chr4.CM0175.420.nc - chr4 No
MD06G011650 mdo transcript=eq;prot=eq;pid=MDP0000146062;tid=MDP0000146062;contig=MDC003534.360 - 6 No
ME09876G00710 mes PACid=17967348;RNAname=cassava4.1_005493m;GeneName=cassava4.1_005493m.g;transcript=eq;prot=eq + scaffold09876 No
MRCC299_03G08280 mrcc299 name=EuGene.0300010861;pid=57433;prot=eq;tid=57433;transcript=eq - Chr_03 No
MT8G099900 mtr Poly(A) polymerase (AHRD V1 *-*- P0ABF1); contains Interpro domain(s) IPR002646 Polynucleotide adenylyltransferase region transcript=eq;prot=eq;pid=Medtr8g099900.1; + 8 No
OL17G01220 olu NULL name=ost_17_006_085,pid=89537,prot=eq,tid=89537 + Chr_17 No
OS04G32490 osa tRNA nucleotidyltransferase%2FpolyA polymerase family protein, putative, expressed transcript=eq;prot=eq; - 4 No
OSINDICA_04G24590 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC017360; - Chr04 No
OT18G01290 ota polynucleotide adenylyltransferase family protein (ISS); name=OT18G01290;protein_id=CAL58576.1;prot=eq + chrom18 No
PP00036G01290 ppa NULL name=estExt_fgenesh1_pg.C_360138,pid=161847,prot=eq,tid=161847 + scaffold_36 No
PT12G10110 ptr PACid=17336797;name=POPTR_0012s10680;alias=pt015747m,fgenesh4_pg.C_LG_XII001025; transcript=eq;prot=eq;protein_id=17336797; + scaffold_12 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier