Sub-family  

Parent family
HOM000307
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (3 genes)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO005089 has 26 genes in 16 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 26 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G25020 aly name=fgenesh2_kg.4__1933__AT2G38640.1;pid=482873;prot=eq;tid=482873 - scaffold_4 No
AT2G38640 ath Protein of unknown function (DUF567); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF567) (TAIR:AT5G41590.1); Has 389 Blast hits to 388 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 388; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF567) transcript=eq;prot=eq; - 2 No
BD2G22030 bdi pid=Bradi2g22030.1;tid=Bradi2g22030.1;GeneName=Bradi2g22030;transcript=eq;prot=eq + Bd2 No
FV6G07770 fve UPF0706 protein At5g01750 (probable) transcript=eq;prot=eq;pid=gene13622 + LG6 No
GM16G34840 gma 16 pid=16303891;transcript=eq;prot=eq;name=Glyma16g34840.1 - Gm16 No
LJ3G004620 lja prot=eq;transcript=eq;scaffold=CM0634;name=chr3.CM0634.360.nd + chr3 No
LJ3G004650 lja prot=eq;transcript=eq;scaffold=CM0634;name=chr3.CM0634.390.nc - chr3 No
MD00G280740 mdo transcript=eq;prot=eq;pid=MDP0000126706;tid=MDP0000126706;contig=MDC012011.348 - MDC012011.348 No
MD04G014590 mdo transcript=eq;prot=eq;pid=MDP0000184760;tid=MDP0000184760;contig=MDC009982.137 - 4 No
ME03614G00270 mes PACid=17965947;RNAname=cassava4.1_015818m;GeneName=cassava4.1_015818m.g;transcript=eq;prot=eq + scaffold03614 No
ME11297G00070 mes PACid=17969300;RNAname=cassava4.1_015750m;GeneName=cassava4.1_015750m.g;transcript=eq;prot=eq - scaffold11297 No
OS05G40630 osa DUF567 domain containing protein, putative, expressed transcript=eq;prot=eq; - 5 No
OS11G02750 osa DUF567 domain containing protein, putative, expressed transcript=eq;prot=eq; - 11 No
OS12G02720 osa DUF567 domain containing protein, putative, expressed transcript=eq;prot=eq; - 12 No
OSINDICA_11G01080 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC045214; - Chr11 No
OSINDICA_12G01810 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC044676; - Chr12 No
PT06G11220 ptr PACid=17321236;name=POPTR_0006s11410;alias=pt018670m,gw1.28.1122.1; transcript=eq;prot=eq;protein_id=17321236; - scaffold_6 No
PT16G14200 ptr PACid=17329408;name=POPTR_0016s14960;alias=pt003487m,gw1.XVI.532.1; transcript=eq;prot=eq;protein_id=17329408; - scaffold_16 No
RC30073G00070 rco name=30073.m002197;gene=30073.t000007;note=30073.t000007;transcript=eq;prot=eq - 30073 No
SB08G002190 sbi 8 prot=eq;pid=5044436;tid=5044436 + chr_8 No
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