Sub-family  

Parent family
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO005016 has 26 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 26 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G23660 aly name=fgenesh2_kg.3__2374__AT3G21540.1;pid=479673;prot=eq;tid=479673 - scaffold_3 No
AT3G21540 ath transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: nucleolus, heterotrimeric G-protein complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Small-subunit processome, Utp12 (InterPro:IPR007148), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT5G16750.1); Has 119158 Blast hits to 33008 proteins in 859 species: Archae - 80; Bacteria - 11912; Metazoa - 49564; Fungi - 26721; Plants - 15098; Viruses - 0; Other Eukaryotes - 15783 (source: NCBI BLink).;transducin family protein / WD-40 repeat family protein transcript=eq;prot=eq; - 3 No
BD1G74940 bdi protein serine/threonine kinase activity (Blast2GO) pid=Bradi1g74940.1;tid=Bradi1g74940.1;GeneName=Bradi1g74940;transcript=eq;prot=eq - Bd1 No
CP00005G01510 cpa name=evm.TU.supercontig_5.151;pid=evm.TU.supercontig_5.151;prot=eq;transcript=eq - supercontig_5 No
CR10G04520 cre name=estExt_fgenesh1_pm.C_chromosome_100251;pid=379588;prot=eq;tid=379595;transcript=eq + chromosome_10 No
FV6G50080 fve WD repeat-containing protein 3 (probable) transcript=eq;prot=eq;pid=gene09807 + LG6 No
GM03G34360 gma 03 pid=16253299;transcript=eq;prot=eq;name=Glyma03g34360.1 + Gm03 No
GM19G37050 gma 19 pid=16314040;transcript=eq;prot=eq;name=Glyma19g37050.1 + Gm19 No
LJ1G050090 lja prot=eq;transcript=eq;scaffold=CM0012;name=chr1.CM0012.490.nc + chr1 No
MD12G010020 mdo transcript=eq;prot=eq;pid=MDP0000192433;tid=MDP0000192433;contig=MDC009606.28 - 12 No
ME06043G00010 mes PACid=17987093;RNAname=cassava4.1_001099m;GeneName=cassava4.1_001099m.g;transcript=eq;prot=eq + scaffold06043 No
MRCC299_13G02190 mrcc299 name=gw2.13.21.1;pid=65501;prot=eq;tid=65501;transcript=eq + Chr_13 No
OL20G00780 olu NULL name=gwEuk.20.15.1,pid=311,prot=eq,tid=311 - Chr_20 No
OS03G05720 osa WD domain, G%2Dbeta repeat domain containing protein, expressed transcript=eq;prot=eq; + 3 No
OSINDICA_03G04860 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC005203; + Chr03 No
OT14G00880 ota transducin family protein / WD-40 repeat family protein (ISS); name=OT14G00880;protein_id=CAL56834.1;prot=eq - chrom14 No
PP00196G00020 ppa NULL name=estExt_gwp_gw1.C_1960001,pid=193188,prot=eq,tid=193188 + scaffold_196 No
PP00196G00070 ppa NULL name=estExt_gwp_gw1.C_1960014,pid=193196,prot=eq,tid=193196 - scaffold_196 No
PT06G12100 ptr PACid=17313476;name=POPTR_0006s12290;alias=pt016998m,estExt_fgenesh4_pm.C_280108; transcript=eq;prot=eq;protein_id=17313476; - scaffold_6 No
RC30078G00380 rco name=30078.m002247;gene=30078.t000040;note=30078.t000040;transcript=eq;prot=eq - 30078 No
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