Sub-family  

Parent family
HOM000960
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO005003 has 26 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 26 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G18830 aly name=fgenesh2_kg.3__1926__AT3G17470.1;pid=479225;prot=eq;tid=479225 + scaffold_3 No
AT3G17470 ath Ca2+-activated RelA/spot homolog (CRSH); FUNCTIONS IN: GTP diphosphokinase activity, calcium ion binding; INVOLVED IN: guanosine tetraphosphate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 3 (TAIR:AT1G54130.1); Has 14021 Blast hits to 13962 proteins in 3173 species: Archae - 6; Bacteria - 8120; Metazoa - 1259; Fungi - 992; Plants - 727; Viruses - 0; Other Eukaryotes - 2917 (source: NCBI BLink).;Ca2+-activated RelA/spot homolog transcript=eq;prot=eq; + 3 No
BD2G34740 bdi myosin heavy chain binding, actin filament binding (Blast2GO) pid=Bradi2g34740.1;tid=Bradi2g34740.1;GeneName=Bradi2g34740;transcript=eq;prot=eq - Bd2 No
CP00146G00230 cpa name=evm.TU.supercontig_146.23;pid=evm.TU.supercontig_146.23;prot=eq;transcript=eq - supercontig_146 No
CR19G00830 cre name=pasa_Sanger_mRNA34338;pid=398464;prot=eq;tid=424895;transcript=eq - scaffold_19 No
FV4G18870 fve Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase ((ppGpp)ase) (probable) transcript=eq;prot=eq;pid=gene22808 - LG4 No
GM13G18000 gma 13 pid=16290674;transcript=eq;prot=eq;name=Glyma13g18000.1 - Gm13 No
MD13G012100 mdo transcript=eq;prot=eq;pid=MDP0000303736;tid=MDP0000303736;contig=MDC018111.175 + 13 No
ME05230G00090 mes PACid=17981717;RNAname=cassava4.1_004192m;GeneName=cassava4.1_004192m.g;transcript=eq;prot=eq + scaffold05230 No
ME06731G00030 mes PACid=17966859;RNAname=cassava4.1_033393m;GeneName=cassava4.1_033393m.g;transcript=eq;prot=eq + scaffold06731 No
MRCC299_04G02770 mrcc299 name=EuGene.0400010286;pid=57757;prot=eq;tid=57757;transcript=eq + Chr_04 No
MT4G123930 mtr GTP pyrophosphokinase (AHRD V1 *-** O54408); contains Interpro domain(s) IPR007685 RelA/SpoT transcript=eq;prot=eq;pid=Medtr4g123930.1; + 4 No
OL03G01330 olu NULL name=e_gwEuk.3.117.1,pid=34045,prot=eq,tid=34045 + Chr_3 No
OS05G06890 osa relA%2DSpoT like protein RSH4, putative, expressed transcript=eq;prot=eq; + 5 No
OSINDICA_05G05640 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC019774; + Chr05 No
OT03G01230 ota RelA/SpoT domain-containing protein / calcium-binding EF-hand family protein (ISS); name=OT03G01230;protein_id=CAL52775.1;prot=eq + chrom03 No
PP00007G02210 ppa NULL name=e_gw1.7.243.1,pid=113771,prot=eq,tid=113771 - scaffold_7 No
PP00171G00250 ppa NULL name=e_gw1.171.95.1,pid=140875,prot=eq,tid=140875 + scaffold_171 No
PT10G00290 ptr PACid=17326012;name=POPTR_0010s00480;alias=pt011510m,gw1.X.3639.1; transcript=eq;prot=eq;protein_id=17326012; + scaffold_10 No
RC29889G01630 rco name=29889.m003399;gene=29889.t000165;note=29889.t000165;transcript=eq;prot=eq + 29889 No
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