Sub-family  

Parent family
HOM000179
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (3 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO004834 has 26 genes in 21 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 26 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G19360 aly name=fgenesh2_kg.1__2017__AT1G18450.1;pid=472063;prot=eq;tid=472063 + scaffold_1 No
AT1G18450 ath Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct, 3' UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression, and resulted in strong pleiotropic phenotypes such as altered organization of plant organs, early flowering, delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes.;actin-related protein 4 transcript=eq;prot=eq; + 1 No
BD1G77930 bdi DNA-dependent ATPase activity, ATP-dependent helicase activity (Blast2GO) pid=Bradi1g77930.1;tid=Bradi1g77930.1;GeneName=Bradi1g77930;transcript=eq;prot=eq - Bd1 No
CP00013G00250 cpa name=evm.TU.supercontig_13.25;pid=evm.TU.supercontig_13.25;prot=eq;transcript=eq + supercontig_13 No
CR06G00160 cre name=e_gwW.3.504.1;pid=112378;prot=eq;tid=112378;transcript=eq + chromosome_6 No
FV0G38730 fve Actin-related protein 4 (similar to) transcript=eq;prot=eq;pid=gene28405 + scf0513124 No
FV3G19800 fve Actin-related protein 4 (similar to) transcript=eq;prot=eq;pid=gene27135 + LG3 No
GM03G25550 gma 03 pid=16252324;transcript=eq;prot=eq;name=Glyma03g25550.1 + Gm03 No
GM07G13230 gma 07 pid=16267144;transcript=eq;prot=eq;name=Glyma07g13230.1 - Gm07 No
GM08G04490 gma 08 pid=16269941;transcript=eq;prot=eq;name=Glyma08g04490.1 - Gm08 No
MD03G021390 mdo transcript=eq;prot=eq;pid=MDP0000233014;tid=MDP0000233014;contig=MDC005247.515 + 3 No
MD11G024700 mdo transcript=eq;prot=eq;pid=MDP0000142804;tid=MDP0000142804;contig=MDC022424.127 - 11 No
ME06446G00230 mes PACid=17963040;RNAname=cassava4.1_007795m;GeneName=cassava4.1_007795m.g;transcript=eq;prot=eq - scaffold06446 No
MT5G066400 mtr Actin-related protein 4 (AHRD V1 ***- Q84M92); contains Interpro domain(s) IPR004000 Actin/actin-like transcript=eq;prot=eq;pid=Medtr5g066400.1; + 5 No
OL04G02560 olu NULL name=eugene.0400010268,pid=31192,prot=eq,tid=31192 + Chr_4 No
OS08G04280 osa actin, putative, expressed transcript=eq;prot=eq; + 8 No
OSINDICA_08G03280 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC025141; + Chr08 No
OT04G02770 ota Actin-related protein Arp2/3 complex, subunit Arp2 (ISS); name=OT04G02770;protein_id=CAL51675.1;prot=eq + chrom04 No
PP00066G01010 ppa NULL name=fgenesh1_pm.scaffold_66000023,pid=57471,prot=eq,tid=57471 + scaffold_66 No
PT12G05650 ptr PACid=17321184;name=POPTR_0012s05840;alias=pt015850m,Pt-ARP4.2,estExt_fgenesh4_pg.C_LG_XII0530,ARP901; transcript=eq;prot=eq;protein_id=17321184; + scaffold_12 No
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