Sub-family  

Parent family
HOM001337
 
Keywords


Overview of gene family content




ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO004729 has 27 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 27 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AT5G07270 ath XB3 ortholog 3 in Arabidopsis thaliana (XBAT33); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 53429 Blast hits to 23032 proteins in 965 species: Archae - 65; Bacteria - 4348; Metazoa - 27793; Fungi - 4781; Plants - 2636; Viruses - 380; Other Eukaryotes - 13426 (source: NCBI BLink).;XB3 ortholog 3 in Arabidopsis thaliana transcript=eq;prot=eq; + 5 No
BD3G31460 bdi RING, subfamily pollen ankyrin, putative pid=Bradi3g31460.1;tid=Bradi3g31460.1;GeneName=Bradi3g31460;transcript=eq;prot=eq - Bd3 No
CP00107G00250 cpa name=evm.TU.supercontig_107.25;pid=evm.TU.supercontig_107.25;prot=eq;transcript=eq + supercontig_107 No
FV7G38920 fve Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B (Serine/threonine-protein phosphatase 6 regulatory subunit ARS-B) (probable) transcript=eq;prot=eq;pid=gene13305 - LG7 No
GM09G26560 gma 09 pid=16276320;transcript=eq;prot=eq;name=Glyma09g26560.1 - Gm09 No
GM10G38270 gma 10 pid=16281383;transcript=eq;prot=eq;name=Glyma10g38270.1 - Gm10 No
GM16G32090 gma 16 pid=16303583;transcript=eq;prot=eq;name=Glyma16g32090.1 - Gm16 No
GM20G29590 gma 20 pid=16317277;transcript=eq;prot=eq;name=Glyma20g29590.1 + Gm20 No
MD01G018910 mdo transcript=eq;prot=eq;pid=MDP0000867915;tid=MDP0000867915;contig=MDC007394.369 + 1 No
MD07G018210 mdo transcript=eq;prot=eq;pid=MDP0000812209;tid=MDP0000812209;contig=MDC011808.126 + 7 No
ME00341G01080 mes PACid=17960801;RNAname=cassava4.1_005767m;GeneName=cassava4.1_005767m.g;transcript=eq;prot=eq - scaffold00341 No
ME11425G00290 mes PACid=17985576;RNAname=cassava4.1_005779m;GeneName=cassava4.1_005779m.g;transcript=eq;prot=eq - scaffold11425 No
MRCC299_13G02640 mrcc299 name=EuGene.1300010276;pid=63626;prot=eq;tid=63626;transcript=eq + Chr_13 No
MT0G03920 mtr Ankyrin repeat-containing protein At5g02620 (AHRD V1 *--- Q6AWW5); contains Interpro domain(s) IPR001841 Zinc finger, RING-type transcript=eq;prot=eq;pid=AC146807_24.1; + AC146807.58 No
MT0G03960 mtr Ankyrin repeat-containing protein At5g02620 (AHRD V1 *--- Q6AWW5); contains Interpro domain(s) IPR001841 Zinc finger, RING-type transcript=eq;prot=eq;pid=AC146807_24.2; + AC146807.58 No
OS10G37730 osa pollen ankyrin, putative, expressed transcript=eq;prot=eq; - 10 No
OSINDICA_10G28140 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC031457; - Chr10 No
PP00013G00210 ppa NULL name=gw1.13.75.1,pid=21854,prot=eq,tid=21854 + scaffold_13 No
PP00256G00240 ppa NULL name=e_gw1.256.8.1,pid=147186,prot=eq,tid=147186 + scaffold_256 No
PT12G12650 ptr PACid=17330671;name=POPTR_0012s13410;alias=pt015750m,estExt_Genewise1_v1.C_LG_XII0277; transcript=eq;prot=eq;protein_id=17330671; + scaffold_12 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier