Sub-family  

Parent family
HOM000090
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO004708 has 27 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 27 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL8G31480 aly name=scaffold_803197.1;pid=919797;prot=eq;tid=951310 + scaffold_8 No
AT5G64730 ath Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; + 5 No
BD3G45337 bdi pid=Bradi3g45337.1;tid=Bradi3g45337.1;GeneName=Bradi3g45337;transcript=eq;prot=eq + Bd3 No
CP00072G00330 cpa name=evm.TU.supercontig_72.33;pid=evm.TU.supercontig_72.33;prot=eq;transcript=eq + supercontig_72 No
CR01G13680 cre name=Chlre2_kg.scaffold_28000017;pid=149069;prot=eq;tid=149069;transcript=eq + chromosome_1 No
FV1G20620 fve Mitogen-activated protein kinase organizer 1 (MAPK organizer 1) (similar to) transcript=eq;prot=eq;pid=gene17850 + LG1 No
GM05G32110 gma 05 pid=16260384;transcript=eq;prot=eq;name=Glyma05g32110.1 - Gm05 No
GM08G15400 gma 08 pid=16271262;transcript=eq;prot=eq;name=Glyma08g15400.1 - Gm08 No
LJ4G036480 lja partial;prot=eq;transcript=eq;scaffold=CM0042;name=chr4.CM0042.1800.nd + chr4 No
MD00G282020 mdo transcript=eq;prot=eq;pid=MDP0000196826;tid=MDP0000196826;contig=MDC012052.416 + MDC012052.416 No
MD13G023190 mdo transcript=eq;prot=eq;pid=MDP0000143524;tid=MDP0000143524;contig=MDC023459.53 + 13 No
ME10018G00060 mes PACid=17970915;RNAname=cassava4.1_012809m;GeneName=cassava4.1_012809m.g;transcript=eq;prot=eq - scaffold10018 No
MRCC299_10G02160 mrcc299 name=e_gw2.10.340.1;pid=85903;prot=eq;tid=85903;transcript=eq + Chr_10 No
MT8G092620 mtr Mitogen-activated protein kinase organizer 1 (AHRD V1 ***- Q9BRX9); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region transcript=eq;prot=eq;pid=Medtr8g092620.1; - 8 No
OL01G06040 olu NULL name=eugene.0100010609,pid=29215,prot=eq,tid=29215 + Chr_1 No
OS02G33860 osa WD domain, G%2Dbeta repeat domain containing protein, expressed transcript=eq;prot=eq; + 2 No
OSINDICA_02G32630 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC014240; + Chr02 No
OT01G05770 ota WD40 repeat-containing protein (ISS); name=OT01G05770;protein_id=CAL50492.1;prot=eq + chrom01 No
PP00427G00100 ppa NULL name=fgenesh1_pm.scaffold_427000004,pid=61696,prot=eq,tid=61696 - scaffold_427 No
PT01G30640 ptr PACid=17334957;name=POPTR_0001s31400;alias=pt039493m,estExt_fgenesh4_pg.C_LG_I2540; transcript=eq;prot=eq;protein_id=17334957; - scaffold_1 No
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