Sub-family  

Parent family
HOM000165
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO004664 has 27 genes in 17 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 27 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL8G07340 aly name=scaffold_800777.1;pid=917377;prot=eq;tid=948890 - scaffold_8 No
AT5G43080 ath Cyclin A3;1 (CYCA3;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: cyclin-dependent protein kinase 3;2 (TAIR:AT1G47210.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Cyclin A3;1 transcript=eq;prot=eq; + 5 No
BD1G14820 bdi CYCLIN, subfamily CYCA3 pid=Bradi1g14820.1;tid=Bradi1g14820.1;GeneName=Bradi1g14820;Name=BdCYCA3;transcript=eq;prot=eq - Bd1 No
BD4G03470 bdi CYCLIN pid=Bradi4g03470.1;tid=Bradi4g03470.1;GeneName=Bradi4g03470;Name=BdCYCA3;transcript=eq;prot=eq - Bd4 No
CP00021G01340 cpa name=evm.TU.supercontig_21.134;pid=evm.TU.supercontig_21.134;prot=eq;transcript=eq + supercontig_21 No
FV2G31050 fve Cyclin-A3-4 (CycA3) (putative) transcript=eq;prot=eq;pid=gene02524 - LG2 No
GM14G09610 gma 14 pid=16294968;transcript=eq;prot=eq;name=Glyma14g09610.1 - Gm14 No
GM17G35550 gma 17 pid=16307149;transcript=eq;prot=eq;name=Glyma17g35550.1 + Gm17 No
MD00G403960 mdo transcript=eq;prot=eq;pid=MDP0000251465;tid=MDP0000251465;contig=MDC018347.447 - MDC018347.447 No
MD00G404000 mdo transcript=eq;prot=eq;pid=MDP0000252649;tid=MDP0000252649;contig=MDC018347.455 - MDC018347.455 No
MD00G513010 mdo transcript=eq;prot=eq;pid=MDP0000226600;tid=MDP0000226600;contig=MDC036745.6 - MDC036745.6 No
ME03237G00540 mes PACid=17992683;RNAname=cassava4.1_010144m;GeneName=cassava4.1_010144m.g;transcript=eq;prot=eq + scaffold03237 No
ME09870G00080 mes PACid=17984485;RNAname=cassava4.1_010135m;GeneName=cassava4.1_010135m.g;transcript=eq;prot=eq - scaffold09870 No
MT1G018680 mtr Cyclin-A3-4 (AHRD V1 ***- Q3ECW2); contains Interpro domain(s) IPR015453 G2/mitotic-specific cyclin A IPR006671 Cyclin, N-terminal transcript=eq;prot=eq;pid=Medtr1g018680.1; + 1 No
OS03G41100 osa cyclin, putative, expressed transcript=eq;prot=eq; + 3 No
OS12G39210 osa cyclin, putative, expressed transcript=eq;prot=eq; + 12 No
OSINDICA_03G39320 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC007494; + Chr03 No
OSINDICA_12G27220 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC033573; + Chr12 No
PT02G12120 ptr PACid=17308293;name=POPTR_0002s12310;alias=pt020851m,Pt-CYCA3.1,estExt_Genewise1_v1.C_LG_II0565; transcript=eq;prot=eq;protein_id=17308293; + scaffold_2 No
PT14G01930 ptr PACid=17316405;name=POPTR_0014s02120;alias=pt035721m,eugene3.00400366,Pt-CYCA3.2; transcript=eq;prot=eq;protein_id=17316405; + scaffold_14 No
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