Sub-family  

Parent family
HOM000231
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO004626 has 27 genes in 16 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 27 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G17580 aly name=fgenesh2_kg.7__1819__AT4G24560.1;pid=492386;prot=eq;tid=492386 + scaffold_7 No
AT4G24560 ath Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation.;ubiquitin-specific protease 16 transcript=eq;prot=eq; - 4 No
BD3G38400 bdi ubiquitin-specific protease activity (Blast2GO) pid=Bradi3g38400.1;tid=Bradi3g38400.1;GeneName=Bradi3g38400;transcript=eq;prot=eq - Bd3 No
BD4G32500 bdi ubiquitin-specific protease activity (Blast2GO) pid=Bradi4g32500.1;tid=Bradi4g32500.1;GeneName=Bradi4g32500;transcript=eq;prot=eq - Bd4 No
FV5G21060 fve Ubiquitin carboxyl-terminal hydrolase 16 (AtUBP16) (probable) transcript=eq;prot=eq;pid=gene12113 + LG5 No
GM02G37670 gma 02 pid=16249378;transcript=eq;prot=eq;name=Glyma02g37670.1 + Gm02 No
GM04G09730 gma 04 pid=16255447;transcript=eq;prot=eq;name=Glyma04g09730.1 - Gm04 No
GM06G09820 gma 06 pid=16262357;transcript=eq;prot=eq;name=Glyma06g09820.1 - Gm06 No
GM14G35960 gma 14 pid=16296553;transcript=eq;prot=eq;name=Glyma14g35960.1 + Gm14 No
MD00G396840 mdo transcript=eq;prot=eq;pid=MDP0000130208;tid=MDP0000130208;contig=MDC018026.236 - MDC018026.236 No
MD15G030260 mdo transcript=eq;prot=eq;pid=MDP0000322619;tid=MDP0000322619;contig=MDC010268.422 + 15 No
ME01624G00170 mes PACid=17980654;RNAname=cassava4.1_001377m;GeneName=cassava4.1_001377m.g;transcript=eq;prot=eq - scaffold01624 No
ME06916G01900 mes PACid=17982003;RNAname=cassava4.1_034234m;GeneName=cassava4.1_034234m.g;transcript=eq;prot=eq - scaffold06916 No
MT3G100480 mtr Ubiquitin carboxyl-terminal hydrolase 16 (AHRD V1 *-*- Q9SB51); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 transcript=eq;prot=eq;pid=Medtr3g100480.1; - 3 No
MT5G066000 mtr Ubiquitin carboxyl-terminal hydrolase 16 (AHRD V1 *-*- Q9SB51); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 transcript=eq;prot=eq;pid=Medtr5g066000.1; + 5 No
OS08G37350 osa ubiquitin carboxyl%2Dterminal hydrolase family protein, expressed transcript=eq;prot=eq; - 8 No
OS09G28940 osa ubiquitin carboxyl%2Dterminal hydrolase domain containing protein, expressed transcript=eq;prot=eq; - 9 No
OSINDICA_08G35590 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC027075; - Chr08 No
OSINDICA_09G23150 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC029034; - Chr09 No
PT02G10310 ptr PACid=17318547;name=POPTR_0002s10500;alias=pt019787m,eugene3.00020964,Pt-UBP16.2; transcript=eq;prot=eq;protein_id=17318547; + scaffold_2 No
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