Sub-family  

Parent family
HOM004253
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (3 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO004478 has 27 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 27 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G11120 aly name=fgenesh2_kg.5__797__AT3G43610.1;pid=484805;prot=eq;tid=484805 - scaffold_5 No
AT3G43610 ath Spc97 / Spc98 family of spindle pole body (SBP) component; FUNCTIONS IN: tubulin binding; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: chloroplast, spindle pole, microtubule organizing center; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: spindle pole body component 98 (TAIR:AT5G06680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Spc97 / Spc98 family of spindle pole body (SBP) component transcript=eq;prot=eq; - 3 No
BD5G18610 bdi microtubule binding (Blast2GO) pid=Bradi5g18610.1;tid=Bradi5g18610.1;GeneName=Bradi5g18610;transcript=eq;prot=eq - Bd5 No
CP00103G00910 cpa name=evm.TU.supercontig_103.91;pid=evm.TU.supercontig_103.91;prot=eq;transcript=eq - supercontig_103 No
CP00103G00920 cpa name=evm.TU.supercontig_103.92;pid=evm.TU.supercontig_103.92;prot=eq;transcript=eq - supercontig_103 No
FV0G08290 fve Gamma-tubulin complex component 6 (GCP-6) (probable) transcript=eq;prot=eq;pid=gene06196 + scf0513158 No
GM01G45540 gma 01 pid=16246430;transcript=eq;prot=eq;name=Glyma01g45540.1 + Gm01 No
LJ1G000230 lja partial;prot=eq;transcript=eq;scaffold=CM0088;name=chr1.CM0088.230.nd - chr1 No
LJ1G000240 lja partial;prot=eq;transcript=eq;scaffold=CM0088;name=chr1.CM0088.240.nd - chr1 No
MD00G089970 mdo transcript=eq;prot=eq;pid=MDP0000237026;tid=MDP0000237026;contig=MDC003830.213 - MDC003830.213 No
MD03G013090 mdo transcript=eq;prot=eq;pid=MDP0000121193;tid=MDP0000121193;contig=MDC003830.220 - 3 No
MD11G015180 mdo transcript=eq;prot=eq;pid=MDP0000414351;tid=MDP0000414351;contig=MDC018823.248 - 11 No
ME00480G00030 mes PACid=17972507;RNAname=cassava4.1_025585m;GeneName=cassava4.1_025585m.g;transcript=eq;prot=eq + scaffold00480 No
ME00480G00050 mes PACid=17972508;RNAname=cassava4.1_021714m;GeneName=cassava4.1_021714m.g;transcript=eq;prot=eq + scaffold00480 No
ME00480G00060 mes PACid=17972505;RNAname=cassava4.1_027895m;GeneName=cassava4.1_027895m.g;transcript=eq;prot=eq + scaffold00480 No
MT0G05170 mtr Gamma-tubulin complex component 6 (AHRD V1 *-*- Q96RT7); contains Interpro domain(s) IPR007259 Spc97/Spc98 transcript=eq;prot=eq;pid=AC151525_7.1; + AC151525.18 No
OS04G47906 osa gamma%2Dtubulin complex component 6, putative, expressed transcript=eq;prot=eq; - 4 No
OSINDICA_04G40130 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC018493; - Chr04 No
PT09G15350 ptr PACid=17311980;name=POPTR_0009s15540;alias=pt004053m; transcript=eq;prot=eq;protein_id=17311980; + scaffold_9 No
RC29854G00120 rco name=29854.m001101;gene=29854.t000012;note=29854.t000012;transcript=eq;prot=eq - 29854 No
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