Sub-family  

Parent family
HOM001954
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO004463 has 27 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 27 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G35620 aly name=scaffold_403718.1;pid=904217;prot=eq;tid=935730 + scaffold_4 No
AT2G47420 ath Ribosomal RNA adenine dimethylase family protein; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA (adenine) methyltransferase activity; INVOLVED IN: rRNA modification, rRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine dimethylase (InterPro:IPR011530), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2); Has 9871 Blast hits to 9860 proteins in 3038 species: Archae - 214; Bacteria - 6519; Metazoa - 271; Fungi - 146; Plants - 120; Viruses - 0; Other Eukaryotes - 2601 (source: NCBI BLink).;Ribosomal RNA adenine dimethylase family protein transcript=eq;prot=eq; + 2 No
BD3G15000 bdi rRNA (adenine-N6,N6-)-dimethyltransferase activity (Blast2GO) pid=Bradi3g15000.1;tid=Bradi3g15000.1;GeneName=Bradi3g15000;transcript=eq;prot=eq - Bd3 No
BD3G51000 bdi rRNA (adenine-N6,N6-)-dimethyltransferase activity (Blast2GO) pid=Bradi3g51000.1;tid=Bradi3g51000.1;GeneName=Bradi3g51000;transcript=eq;prot=eq - Bd3 No
CP00026G02130 cpa name=evm.TU.supercontig_26.213;pid=evm.TU.supercontig_26.213;prot=eq;transcript=eq + supercontig_26 No
CR01G08910 cre name=OVA_OVA_Chlre2_kg.scaffold_1000589;pid=206075;prot=eq;tid=206080;transcript=eq + chromosome_1 No
FV5G34890 fve Probable dimethyladenosine transferase (putative) transcript=eq;prot=eq;pid=gene02302 + LG5 No
GM06G47390 gma 06 pid=16265478;transcript=eq;prot=eq;name=Glyma06g47390.1 - Gm06 No
GM13G18570 gma 13 pid=16290735;transcript=eq;prot=eq;name=Glyma13g18570.1 - Gm13 No
LJ0G154750 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_048522;name=LjSGA_048522.1 + LjSGA_048522 No
MD11G028790 mdo transcript=eq;prot=eq;pid=MDP0000316637;tid=MDP0000316637;contig=MDC044046.6 + 11 No
ME05434G00040 mes PACid=17976888;RNAname=cassava4.1_010963m;GeneName=cassava4.1_010963m.g;transcript=eq;prot=eq + scaffold05434 No
MRCC299_08G05070 mrcc299 name=e_gw2.08.332.1;pid=84159;prot=eq;tid=84159;transcript=eq - Chr_08 No
MT3G007750 mtr Dimethyladenosine transferase (AHRD V1 ***- Q6BSY5); contains Interpro domain(s) IPR011530 rRNA adenine dimethylase transcript=eq;prot=eq;pid=Medtr3g007750.1; - 3 No
OL08G02760 olu NULL name=e_gwEuk.8.338.1,pid=42375,prot=eq,tid=42375 - Chr_8 No
OS10G10434 osa dimethyladenosine transferase, putative, expressed transcript=eq;prot=eq; + 10 No
OSINDICA_10G07360 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC030127; + Chr10 No
OT08G02870 ota Ribosomal RNA adenine dimethylase (ISS); name=OT08G02870;protein_id=CAL55025.1;prot=eq - chrom08 No
PP00112G00500 ppa NULL name=e_gw1.112.81.1,pid=134463,prot=eq,tid=134463 + scaffold_112 No
PT14G11440 ptr PACid=17322013;name=POPTR_0014s11630;alias=pt035761m; transcript=eq;prot=eq;protein_id=17322013; + scaffold_14 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier