Sub-family  

Parent family
HOM001293
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (1 gene)



The gene family ORTHO004418 has 27 genes in 17 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 27 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G00970 aly name=scaffold_400105.1;pid=900604;prot=eq;tid=932117 - scaffold_4 No
AL7G01280 aly name=fgenesh2_kg.7__144__AT4G39340.1;pid=490711;prot=eq;tid=490711 - scaffold_7 No
AT2G21740 ath Protein of unknown function (DUF1278); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, egg cell; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1278) (TAIR:AT2G21750.1); Has 82 Blast hits to 82 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF1278) transcript=eq;prot=eq; - 2 No
AT4G39340 ath Protein of unknown function (DUF1278); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1278) (TAIR:AT2G21750.1); Has 101 Blast hits to 101 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF1278) transcript=eq;prot=eq; - 4 No
BD4G24640 bdi pid=Bradi4g24640.1;tid=Bradi4g24640.1;GeneName=Bradi4g24640;transcript=eq;prot=eq + Bd4 No
CP00072G00320 cpa name=evm.TU.supercontig_72.32;pid=evm.TU.supercontig_72.32;prot=eq;transcript=eq - supercontig_72 No
FV1G20600 fve Putative sporulation transcription regulator whiA (probable) transcript=eq;prot=eq;pid=gene17848 - LG1 No
FV5G10250 fve Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform (probable) transcript=eq;prot=eq;pid=gene22178 + LG5 No
GM05G32120 gma 05 pid=16260385;transcript=eq;prot=eq;name=Glyma05g32120.1 + Gm05 No
GM08G15410 gma 08 pid=16271263;transcript=eq;prot=eq;name=Glyma08g15410.1 + Gm08 No
GM10G36800 gma 10 pid=16281221;transcript=eq;prot=eq;name=Glyma10g36800.1 + Gm10 No
LJ0G109520 lja prot=eq;transcript=eq;scaffold=LjSGA_034802;name=LjSGA_034802.1 + LjSGA_034802 No
MD00G138490 mdo transcript=eq;prot=eq;pid=MDP0000179778;tid=MDP0000179778;contig=MDC005895.545 - MDC005895.545 No
MD00G267260 mdo transcript=eq;prot=eq;pid=MDP0000943049;tid=MDP0000943049;contig=MDC011462.167 - MDC011462.167 No
ME06948G00090 mes PACid=17973643;RNAname=cassava4.1_033650m;GeneName=cassava4.1_033650m.g;transcript=ne;prot=eq - scaffold06948 No
ME06948G00100 mes PACid=17973601;RNAname=cassava4.1_026546m;GeneName=cassava4.1_026546m.g;transcript=ne;prot=eq - scaffold06948 No
OS11G06730 osa ECAGL2 %2D ECA1 gametogenesis related family protein precursor, expressed transcript=eq;prot=eq; - 11 No
OSINDICA_11G05340 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC045305; - Chr11 No
PT01G30650 ptr PACid=17313087;name=POPTR_0001s31410;alias=pt040675m; transcript=eq;prot=eq;protein_id=17313087; + scaffold_1 No
PT01G30660 ptr PACid=17334980;name=POPTR_0001s31420;alias=pt040795m; transcript=eq;prot=eq;protein_id=17334980; + scaffold_1 No
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