Sub-family  

Parent family
HOM000498
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family ORTHO004234 has 27 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 27 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G17600 aly name=fgenesh2_kg.1__1822__AT1G16720.1;pid=471868;prot=eq;tid=471868 + scaffold_1 No
AT1G16720 ath Encodes HCF173, a protein with weak similarities to the superfamily of the short-chain dehydrogenases/reductases. HCF173 is involved in the initiation of translation of the psbA mRNA. Mutants shows a high chlorophyll fluorescence phenotype (hcf) and are severely affected in the accumulation of PSII subunits. The protein HCF173 is localized in the chloroplast, where it is mainly associated with the membrane system and is part of a higher molecular weight complex with psbA mRNA as a component of this complex.;high chlorophyll fluorescence phenotype 173 transcript=eq;prot=eq; + 1 No
BD0G00310 bdi pid=Bradi0009s00240.2;tid=Bradi0009s00240.2;GeneName=Bradi0009s00240;transcript=eq;prot=eq - scaffold_9 No
CP04293G00020 cpa name=evm.TU.supercontig_4293.2;pid=evm.TU.supercontig_4293.2;prot=eq;transcript=eq - supercontig_4293 No
CR13G03540 cre name=SKA_e_gwW.2.317.1;pid=205878;prot=eq;tid=205883;transcript=eq + chromosome_13 No
GM07G00240 gma 07 pid=16265627;transcript=eq;prot=eq;name=Glyma07g00240.1 + Gm07 No
GM08G24280 gma 08 pid=16272318;transcript=eq;prot=eq;name=Glyma08g24280.1 - Gm08 No
LJ3G019780 lja partial;prot=eq;transcript=eq;scaffold=CM0292;name=chr3.CM0292.80.nc + chr3 No
ME11240G00010 mes PACid=17966571;RNAname=cassava4.1_004470m;GeneName=cassava4.1_004470m.g;transcript=eq;prot=eq - scaffold11240 No
MRCC299_15G00720 mrcc299 name=est_orfs.Chr_15_591_3200633:1;pid=50720;prot=eq;tid=50720;transcript=eq + Chr_15 No
MT4G005070 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR016040 NAD(P)-binding domain transcript=eq;prot=eq;pid=Medtr4g005070.1; + 4 No
OL15G02470 olu NULL name=gwEuk.15.46.1,pid=1559,prot=eq,tid=1559 + Chr_15 No
OS02G04510 osa UOS1, putative, expressed transcript=eq;prot=eq; + 2 No
OS06G49120 osa Complex I intermediate%2Dassociated protein 30 domain containing protein, putative, expressed transcript=eq;prot=eq; - 6 No
OSINDICA_02G03840 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC012456; + Chr02 No
OSINDICA_06G45010 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC012020; - Chr06 No
OT16G02960 ota putative UOS1 (ISS); name=OT16G02960;protein_id=CAL58294.1;prot=eq + chrom16 No
PP00326G00320 ppa NULL name=e_gw1.326.25.1,pid=151003,prot=eq,tid=151003 + scaffold_326 No
PT07G14510 ptr PACid=17322686;name=POPTR_0007s15080;alias=pt025115m; transcript=eq;prot=eq;protein_id=17322686; - scaffold_7 No
PT14G00060 ptr PACid=17325856;name=POPTR_0014s00250;alias=pt042806m; transcript=eq;prot=eq;protein_id=17325856; - scaffold_14 No
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