Sub-family  

Parent family
HOM002184
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO004106 has 28 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 28 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G38820 aly name=scaffold_704095.1;pid=916353;prot=eq;tid=947866 + scaffold_7 No
AL7G38830 aly name=scaffold_704096.1;pid=916354;prot=eq;tid=947867 + scaffold_7 No
AL7G38850 aly name=scaffold_704098.1;pid=916356;prot=eq;tid=947869 + scaffold_7 No
AL7G38860 aly name=fgenesh2_kg.7__3474__AT5G39450.1;pid=494041;prot=eq;tid=494041 - scaffold_7 No
AT5G39450 ath F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G39460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; + 5 No
AT5G39460 ath F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G39480.1); Has 56 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; - 5 No
AT5G39480 ath F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G39490.1); Has 54 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; - 5 No
AT5G39490 ath F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G39480.1); Has 54 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; - 5 No
BD3G13220 bdi F-Box pid=Bradi3g13220.1;tid=Bradi3g13220.1;GeneName=Bradi3g13220;transcript=eq;prot=eq - Bd3 No
CP00037G00040 cpa name=evm.TU.supercontig_37.4;pid=evm.TU.supercontig_37.4;prot=eq;transcript=eq + supercontig_37 No
FV0G21600 fve F-box protein At5g39450 (probable) transcript=eq;prot=eq;pid=gene16175 - scf0513168 No
GM05G32750 gma 05 pid=16260459;transcript=eq;prot=eq;name=Glyma05g32750.1 + Gm05 No
GM06G16220 gma 06 pid=16263138;transcript=eq;prot=eq;name=Glyma06g16220.1 + Gm06 No
GM08G00410 gma 08 pid=16269447;transcript=eq;prot=eq;name=Glyma08g00410.1 + Gm08 No
MD00G058740 mdo transcript=eq;prot=eq;pid=MDP0000478657;tid=MDP0000478657;contig=MDC002448.280 - MDC002448.280 No
ME02932G00090 mes PACid=17988482;RNAname=cassava4.1_003696m;GeneName=cassava4.1_003696m.g;transcript=eq;prot=eq + scaffold02932 No
MT3G096670 mtr F-box protein At5g39450 (AHRD V1 *-*- Q8RWD6); contains Interpro domain(s) IPR010795 Prenylcysteine lyase transcript=eq;prot=eq;pid=Medtr3g096670.1; + 3 No
OS08G01430 osa OsFBX260 %2D F%2Dbox domain containing protein, expressed transcript=eq;prot=eq; - 8 No
OSINDICA_08G00500 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC024946; - Chr08 No
PP00173G00540 ppa NULL name=estExt_gwp_gw1.C_1730081,pid=192109,prot=eq,tid=192109 + scaffold_173 No
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