Sub-family  

Parent family
HOM002081
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (2 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO004054 has 28 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 28 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G05800 aly name=fgenesh2_kg.7__571__AT4G35140.1;pid=491138;prot=eq;tid=491138 + scaffold_7 No
AT4G35140 ath Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G38480.1); Has 10094 Blast hits to 7474 proteins in 477 species: Archae - 10; Bacteria - 1944; Metazoa - 3788; Fungi - 2083; Plants - 884; Viruses - 0; Other Eukaryotes - 1385 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; - 4 No
BD3G32380 bdi nucleoside-triphosphatase activity, ligand-dependent nuclear receptor transcription coactivator activity (Blast2GO) pid=Bradi3g32380.1;tid=Bradi3g32380.1;GeneName=Bradi3g32380;transcript=eq;prot=eq + Bd3 No
CP00020G01230 cpa name=evm.TU.supercontig_20.123;pid=evm.TU.supercontig_20.123;prot=eq;transcript=eq - supercontig_20 No
CR07G03410 cre name=fgenesh1_pg.C_scaffold_10000331;pid=10159;prot=eq;tid=10159;transcript=eq - chromosome_7 No
FV2G27290 fve WD repeat-containing protein 42A (probable) transcript=eq;prot=eq;pid=gene23749 - LG2 No
GM10G43020 gma 10 pid=16281941;transcript=eq;prot=eq;name=Glyma10g43020.1 - Gm10 No
GM20G23960 gma 20 pid=16316608;transcript=eq;prot=eq;name=Glyma20g23960.1 + Gm20 No
LJ5G031180 lja partial;prot=eq;transcript=eq;scaffold=LjT39E05;name=chr5.LjT39E05.10.nd + chr5 No
MD00G034660 mdo transcript=eq;prot=eq;pid=MDP0000264417;tid=MDP0000264417;contig=MDC001462.252 - MDC001462.252 No
ME00172G00010 mes PACid=17985235;RNAname=cassava4.1_006338m;GeneName=cassava4.1_006338m.g;transcript=eq;prot=eq + scaffold00172 No
ME03329G00210 mes PACid=17966920;RNAname=cassava4.1_006669m;GeneName=cassava4.1_006669m.g;transcript=eq;prot=eq - scaffold03329 No
OL13G01560 olu NULL name=eugene.1300010160,pid=27138,prot=eq,tid=27138 - Chr_13 No
OL21G01420 olu NULL name=gwEuk.21.140.1,pid=4635,prot=eq,tid=4635 + Chr_21 No
OS10G39760 osa WD domain, G%2Dbeta repeat domain containing protein, expressed transcript=eq;prot=eq; + 10 No
OSINDICA_10G30060 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC031589; + Chr10 No
OT13G01690 ota WD40 repeat-containing protein (ISS); name=OT13G01690;protein_id=CAL56497.1;prot=eq - chrom13 No
PP00007G01070 ppa NULL name=e_gw1.7.112.1,pid=113781,prot=eq,tid=113781 - scaffold_7 No
PP00048G01400 ppa NULL name=estExt_gwp_gw1.C_480130,pid=181363,prot=eq,tid=181363 + scaffold_48 No
PP00065G01100 ppa NULL name=gw1.65.66.1,pid=13541,prot=eq,tid=13541 + scaffold_65 No
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