Sub-family  

Parent family
HOM001986
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO003841 has 28 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 28 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G19620 aly name=fgenesh2_kg.3__2009__AT3G18160.1;pid=479308;prot=eq;tid=479308 + scaffold_3 No
AT1G48635 ath peroxin 3 (PEX3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome organization; LOCATED IN: mitochondrion, peroxisome, integral to peroxisomal membrane; CONTAINS InterPro DOMAIN/s: Peroxin-3 (InterPro:IPR006966); BEST Arabidopsis thaliana protein match is: peroxin 3-1 (TAIR:AT3G18160.1); Has 293 Blast hits to 293 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 111; Plants - 49; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).;peroxin 3 transcript=eq;prot=eq; + 1 No
AT3G18160 ath peroxin 3-1 (PEX3-1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome organization; LOCATED IN: peroxisome, integral to peroxisomal membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxin-3 (InterPro:IPR006966); BEST Arabidopsis thaliana protein match is: peroxin 3 (TAIR:AT1G48635.1); Has 308 Blast hits to 308 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 121; Plants - 49; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).;peroxin 3-1 transcript=eq;prot=eq; + 3 No
BD1G77830 bdi pid=Bradi1g77830.1;tid=Bradi1g77830.1;GeneName=Bradi1g77830;transcript=eq;prot=eq - Bd1 No
CP00003G04220 cpa name=evm.TU.supercontig_3.422;pid=evm.TU.supercontig_3.422;prot=eq;transcript=eq - supercontig_3 No
FV5G17000 fve Peroxisomal biogenesis factor 3 (probable) transcript=eq;prot=eq;pid=gene09414 + LG5 No
GM05G34080 gma 05 pid=16260621;transcript=eq;prot=eq;name=Glyma05g34080.1 + Gm05 No
GM08G05600 gma 08 pid=16270091;transcript=eq;prot=eq;name=Glyma08g05600.1 - Gm08 No
LJ4G036760 lja prot=eq;transcript=eq;scaffold=CM0042;name=chr4.CM0042.2080.nc - chr4 No
MD00G337380 mdo transcript=eq;prot=eq;pid=MDP0000242529;tid=MDP0000242529;contig=MDC015052.87 + MDC015052.87 No
MD14G021680 mdo transcript=eq;prot=eq;pid=MDP0000322500;tid=MDP0000322500;contig=MDC015052.88 - 14 No
ME06631G00220 mes PACid=17968112;RNAname=cassava4.1_017360m;GeneName=cassava4.1_017360m.g;transcript=eq;prot=eq - scaffold06631 No
ME06631G00230 mes PACid=17968094;RNAname=cassava4.1_029656m;GeneName=cassava4.1_029656m.g;transcript=eq;prot=eq - scaffold06631 No
MT8G106780 mtr Peroxisomal biogenesis factor 3 (AHRD V1 *-*- P56589); contains Interpro domain(s) IPR006966 Peroxin-3 transcript=eq;prot=eq;pid=Medtr8g106780.1; - 8 No
OS09G14510 osa peroxin%2D3 family protein, putative, expressed transcript=eq;prot=eq; + 9 No
OSINDICA_09G10460 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC028217; + Chr09 No
PP00009G00380 ppa NULL name=estExt_fgenesh1_pm.C_90006,pid=104553,prot=eq,tid=104553 + scaffold_9 No
PP00016G01760 ppa NULL name=fgenesh1_pm.scaffold_16000023,pid=55680,prot=eq,tid=55680 + scaffold_16 No
PP00114G00650 ppa NULL name=estExt_fgenesh1_kg.C_1140005,pid=110076,prot=eq,tid=110076 - scaffold_114 No
PT12G04520 ptr PACid=17338144;name=POPTR_0012s04710;alias=pt016344m; transcript=eq;prot=eq;protein_id=17338144; + scaffold_12 No
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