Sub-family  

Parent family
HOM002630
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO003739 has 28 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 28 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G24920 aly name=scaffold_102635.1;pid=889841;prot=eq;tid=921354 + scaffold_1 No
AL2G19370 aly name=scaffold_201970.1;pid=894896;prot=eq;tid=926409 - scaffold_2 No
AL5G00510 aly name=fgenesh1_pm.C_scaffold_5000043;pid=322499;prot=eq;tid=322499 + scaffold_5 No
AL5G00540 aly name=scaffold_500059.1;pid=904355;prot=eq;tid=935868 + scaffold_5 No
AT1G23150 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70780.1); Has 124 Blast hits to 124 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 1 No
AT1G70780 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 1 No
CP00002G02270 cpa name=evm.TU.supercontig_2.227;pid=evm.TU.supercontig_2.227;prot=eq;transcript=eq - supercontig_2 No
FV0G07020 fve hypothetical protein transcript=eq;prot=eq;pid=gene04104 + scf0513158 No
GM05G27200 gma 05 pid=16259792;transcript=eq;prot=eq;name=Glyma05g27200.1 - Gm05 No
LJ0G082940 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_027521;name=LjSGA_027521.1 - LjSGA_027521 No
MD00G137570 mdo transcript=eq;prot=eq;pid=MDP0000237977;tid=MDP0000237977;contig=MDC005861.294 + MDC005861.294 No
MD00G166230 mdo transcript=eq;prot=eq;pid=MDP0000824358;tid=MDP0000824358;contig=MDC007110.152 + MDC007110.152 No
MD00G166240 mdo transcript=eq;prot=eq;pid=MDP0000283058;tid=MDP0000283058;contig=MDC007110.154 + MDC007110.154 No
ME04716G00210 mes PACid=17969719;RNAname=cassava4.1_018807m;GeneName=cassava4.1_018807m.g;transcript=eq;prot=eq + scaffold04716 No
ME09354G00140 mes PACid=17982343;RNAname=cassava4.1_018849m;GeneName=cassava4.1_018849m.g;transcript=eq;prot=eq - scaffold09354 No
MT1G031680 mtr Unknown Protein (AHRD V1) transcript=eq;prot=eq;pid=Medtr1g031680.1; + 1 No
MT4G121810 mtr Unknown Protein (AHRD V1) transcript=eq;prot=eq;pid=Medtr4g121810.1; + 4 No
OS02G21920 osa CPuORF24 %2D conserved peptide uORF%2Dcontaining transcript, expressed transcript=eq;prot=eq; + 2 No
OS02G21925 osa expressed protein transcript=eq;prot=eq; + 2 No
OSINDICA_02G21100 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC013610; + Chr02 No
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