Sub-family  

Parent family
HOM000261
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO003723 has 28 genes in 21 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 28 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G17340 aly name=fgenesh2_kg.1__1799__AT1G16470.2;pid=471845;prot=eq;tid=471845 + scaffold_1 No
AL2G28230 aly name=scaffold_202899.1;pid=895825;prot=eq;tid=927338 - scaffold_2 No
AT1G16470 ath Encodes 20S proteasome subunit PAB1 (PAB1).;proteasome subunit PAB1 transcript=eq;prot=eq; + 1 No
AT1G79210 ath N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; FUNCTIONS IN: endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: defense response to bacterium, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: proteasome subunit PAB1 (TAIR:AT1G16470.2); Has 6770 Blast hits to 6769 proteins in 496 species: Archae - 887; Bacteria - 41; Metazoa - 2415; Fungi - 1555; Plants - 857; Viruses - 0; Other Eukaryotes - 1015 (source: NCBI BLink).;N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein transcript=eq;prot=eq; - 1 No
BD3G49610 bdi 26S, subfamily 20S pid=Bradi3g49610.1;tid=Bradi3g49610.1;GeneName=Bradi3g49610;Name=BdPAB1;transcript=eq;prot=eq + Bd3 No
CP00081G00070 cpa name=evm.TU.supercontig_81.7;pid=evm.TU.supercontig_81.7;prot=eq;transcript=eq - supercontig_81 No
CR08G03120 cre name=estExt_fgenesh2_pg.C_640063;pid=194387;prot=eq;tid=194387;transcript=eq + chromosome_8 No
GM01G25940 gma 01 pid=16244469;transcript=eq;prot=eq;name=Glyma01g25940.1 + Gm01 No
GM03G16660 gma 03 pid=16251836;transcript=eq;prot=eq;name=Glyma03g16660.1 - Gm03 No
GM08G17810 gma 08 pid=16271518;transcript=eq;prot=eq;name=Glyma08g17810.1 + Gm08 No
LJ1G054920 lja prot=eq;transcript=eq;scaffold=CM0109;name=chr1.CM0109.50.nd - chr1 No
ME03115G00170 mes PACid=17974345;RNAname=cassava4.1_015183m;GeneName=cassava4.1_015183m.g;transcript=eq;prot=eq - scaffold03115 No
MRCC299_03G00270 mrcc299 name=EuGene.0300010027;pid=56599;prot=eq;tid=56599;transcript=eq - Chr_03 No
OL06G00170 olu NULL name=e_gwEuk.6.469.1,pid=41065,prot=eq,tid=41065 + Chr_6 No
OS03G26970 osa peptidase, T1 family, putative, expressed transcript=eq;prot=eq; + 3 No
OSINDICA_08G32870 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC026912; - Chr08 No
OT06G00230 ota alpha 2 subunit of 20S proteasome (ISS); name=OT06G00230;protein_id=CAL53282.1;prot=eq + chrom06 No
PP00002G03010 ppa NULL name=fgenesh1_pg.scaffold_2000311,pid=64434,prot=eq,tid=64434 - scaffold_2 No
PP00061G01070 ppa NULL name=estExt_Genewise1.C_610114,pid=210378,prot=eq,tid=210378 - scaffold_61 No
PT12G14220 ptr PACid=17344413;name=POPTR_0012s14980;alias=pt016259m,Pt-PAB1.4,estExt_fgenesh4_pg.C_LG_XII1303; transcript=eq;prot=eq;protein_id=17344413; - scaffold_12 No
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