Sub-family  

Parent family
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (1 gene)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO003612 has 29 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 29 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G24400 aly name=scaffold_702593.1;pid=914851;prot=eq;tid=946364 + scaffold_7 No
AT4G18372 ath Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Small nuclear ribonucleoprotein family protein transcript=eq;prot=eq; - 4 No
BD1G32570 bdi pid=Bradi1g32570.1;tid=Bradi1g32570.1;GeneName=Bradi1g32570;transcript=eq;prot=eq + Bd1 No
CR12G06110 cre name=kg.chromosome_12_#_1144_#_TC44850;pid=314045;prot=eq;tid=314052;transcript=eq - chromosome_12 No
FV3G05530 fve Uncharacterized mitochondrial protein AtMg00310 (similar to) transcript=eq;prot=eq;pid=gene30363 - LG3 No
FV4G17650 fve hypothetical protein transcript=eq;prot=eq;pid=gene06608 + LG4 No
GM13G29110 gma 13 pid=16291951;transcript=eq;prot=eq;name=Glyma13g29110.1 - Gm13 No
LJ0G122850 lja prot=eq;transcript=eq;scaffold=LjSGA_038645;name=LjSGA_038645.1 + LjSGA_038645 No
LJ0G388600 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_142169;name=LjSGA_142169.1 + LjSGA_142169 No
MD00G163100 mdo transcript=eq;prot=eq;pid=MDP0000668490;tid=MDP0000668490;contig=MDC006990.204 + MDC006990.204 No
MD00G362850 mdo transcript=eq;prot=eq;pid=MDP0000504424;tid=MDP0000504424;contig=MDC016311.97 + MDC016311.97 No
MD05G007110 mdo transcript=eq;prot=eq;pid=MDP0000301072;tid=MDP0000301072;contig=MDC016311.96 - 5 No
ME03859G00080 mes PACid=17972291;RNAname=cassava4.1_019481m;GeneName=cassava4.1_019481m.g;transcript=eq;prot=eq + scaffold03859 No
MRCC299_07G01150 mrcc299 name=EuGene.0700010114;pid=59829;prot=eq;tid=59829;transcript=eq + Chr_07 No
MT2G019100 mtr Small nuclear ribonucleoprotein-associated protein B (AHRD V1 ***- Q55A45); contains Interpro domain(s) IPR001163 Like-Sm ribonucleoprotein, core transcript=eq;prot=eq;pid=Medtr2g019100.1; + 2 No
MT2G019130 mtr Small nuclear ribonucleoprotein-associated protein B (AHRD V1 ***- Q55A45); contains Interpro domain(s) IPR001163 Like-Sm ribonucleoprotein, core transcript=eq;prot=eq;pid=Medtr2g019130.1; + 2 No
OS06G46390 osa LSM domain containing protein, expressed transcript=eq;prot=eq; - 6 No
OSINDICA_06G42460 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC039250; - Chr06 No
PP00022G00830 ppa NULL name=gw1.22.167.1,pid=29588,prot=eq,tid=29588 - scaffold_22 No
PT15G12720 ptr PACid=17338185;name=POPTR_0015s13670;alias=pt001301m,eugene3.00151160; transcript=eq;prot=eq;protein_id=17338185; + scaffold_15 No
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