Sub-family  

Parent family
HOM001955
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO003528 has 29 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 29 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G08550 aly name=fgenesh2_kg.6__831__AT5G08560.1;pid=487697;prot=eq;tid=487697 - scaffold_6 No
AT5G08560 ath transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G43920.1); Has 58921 Blast hits to 28907 proteins in 822 species: Archae - 84; Bacteria - 8409; Metazoa - 23216; Fungi - 12597; Plants - 7341; Viruses - 6; Other Eukaryotes - 7268 (source: NCBI BLink).;transducin family protein / WD-40 repeat family protein transcript=eq;prot=eq; - 5 No
BD4G03690 bdi transcription corepressor activity (Blast2GO) pid=Bradi4g03690.1;tid=Bradi4g03690.1;GeneName=Bradi4g03690;transcript=eq;prot=eq + Bd4 No
FV6G35540 fve WD repeat-containing protein 26 (probable) transcript=eq;prot=eq;pid=gene28780 + LG6 No
GM02G45200 gma 02 pid=16250245;transcript=eq;prot=eq;name=Glyma02g45200.1 + Gm02 No
GM08G41670 gma 08 pid=16273493;transcript=eq;prot=eq;name=Glyma08g41670.1 + Gm08 No
GM14G03550 gma 14 pid=16294230;transcript=eq;prot=eq;name=Glyma14g03550.1 - Gm14 No
GM18G14400 gma 18 pid=16308798;transcript=eq;prot=eq;name=Glyma18g14400.1 - Gm18 No
LJ2G036950 lja partial;prot=eq;transcript=eq;scaffold=LjT36E17;name=chr2.LjT36E17.40.nd - chr2 No
MD09G011170 mdo transcript=eq;prot=eq;pid=MDP0000496348;tid=MDP0000496348;contig=MDC008411.143 - 9 No
MD17G011760 mdo transcript=eq;prot=eq;pid=MDP0000230709;tid=MDP0000230709;contig=MDC015578.50 - 17 No
ME05875G02450 mes PACid=17973062;RNAname=cassava4.1_004496m;GeneName=cassava4.1_004496m.g;transcript=eq;prot=eq - scaffold05875 No
ME11960G00100 mes PACid=17993088;RNAname=cassava4.1_004358m;GeneName=cassava4.1_004358m.g;transcript=eq;prot=eq + scaffold11960 No
MRCC299_07G03020 mrcc299 name=gw2.07.139.1;pid=67384;prot=eq;tid=67384;transcript=eq + Chr_07 No
MT5G090420 mtr WD repeat-containing protein 26 (AHRD V1 ***- Q8C6G8); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region transcript=eq;prot=eq;pid=Medtr5g090420.1; + 5 No
OS02G19210 osa WD repeat%2Dcontaining protein, putative, expressed transcript=eq;prot=eq; + 2 No
OSINDICA_02G18080 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC013424; + Chr02 No
PP00123G00880 ppa NULL name=fgenesh1_pg.scaffold_123000092,pid=84461,prot=eq,tid=84461 - scaffold_123 No
PP00136G00200 ppa NULL name=e_gw1.136.36.1,pid=137298,prot=eq,tid=137298 + scaffold_136 No
PT02G05480 ptr PACid=17306411;name=POPTR_0002s05670;alias=pt020321m; transcript=eq;prot=eq;protein_id=17306411; - scaffold_2 No
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