Sub-family  

Parent family
HOM000363
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (5 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO003454 has 29 genes in 17 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 29 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G17330 aly name=fgenesh2_kg.4__1218__AT2G32290.1;pid=482158;prot=eq;tid=482158 - scaffold_4 No
AL7G28680 aly name=fgenesh2_kg.7__2803__AT4G15210.1;pid=493370;prot=eq;tid=493370 + scaffold_7 No
AT2G32290 ath beta-amylase 6 (BAM6); FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 5 (TAIR:AT4G15210.1); Has 842 Blast hits to 841 proteins in 166 species: Archae - 0; Bacteria - 87; Metazoa - 0; Fungi - 0; Plants - 690; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).;beta-amylase 6 transcript=eq;prot=eq; - 2 No
AT4G15210 ath cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.;beta-amylase 5 transcript=eq;prot=eq; - 4 No
BD1G25440 bdi Glycosyl hydrolase (GH), subfamily GH14 pid=Bradi1g25440.1;tid=Bradi1g25440.1;GeneName=Bradi1g25440;Name=BdGH14_2;transcript=eq;prot=eq - Bd1 No
BD1G25447 bdi pid=Bradi1g25447.1;tid=Bradi1g25447.1;GeneName=Bradi1g25447;transcript=eq;prot=eq - Bd1 No
FV1G15990 fve Beta-amylase (similar to) transcript=eq;prot=eq;pid=gene23897 - LG1 No
GM06G45700 gma 06 pid=16265286;transcript=eq;prot=eq;name=Glyma06g45700.1 + Gm06 No
GM12G11130 gma 12 pid=16287149;transcript=eq;prot=eq;name=Glyma12g11130.1 - Gm12 No
GM12G32330 gma 12 pid=16288633;transcript=eq;prot=eq;name=Glyma12g32330.1 - Gm12 No
GM13G38110 gma 13 pid=16293009;transcript=eq;prot=eq;name=Glyma13g38110.1 - Gm13 No
GM13G38120 gma 13 pid=16293010;transcript=eq;prot=eq;name=Glyma13g38120.1 - Gm13 No
LJ3G028390 lja prot=eq;transcript=eq;scaffold=CM0152;name=chr3.CM0152.120.nc + chr3 No
MD00G035910 mdo transcript=eq;prot=eq;pid=MDP0000764433;tid=MDP0000764433;contig=MDC001514.358 + MDC001514.358 No
MD09G007320 mdo transcript=eq;prot=eq;pid=MDP0000142134;tid=MDP0000142134;contig=MDC016695.152 - 9 No
MD17G007960 mdo transcript=eq;prot=eq;pid=MDP0000902717;tid=MDP0000902717;contig=MDC016695.156 - 17 No
ME08974G00010 mes PACid=17966555;RNAname=cassava4.1_005562m;GeneName=cassava4.1_005562m.g;transcript=eq;prot=eq + scaffold08974 No
MT2G089030 mtr Beta-amylase (Fragment) (AHRD V1 **** D1I6G6_VITVI); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core transcript=eq;prot=eq;pid=Medtr2g089030.1; + 2 No
OS07G35880 osa beta%2Damylase, putative, expressed transcript=eq;prot=eq; + 7 No
OS07G35940 osa beta%2Damylase, putative transcript=eq;prot=eq; + 7 No
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