Sub-family  

Parent family
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO003453 has 29 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 29 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G14970 aly name=fgenesh1_pg.C_scaffold_4001140;pid=344798;prot=eq;tid=344798 - scaffold_4 No
AT2G30350 ath Excinuclease ABC, C subunit, N-terminal; FUNCTIONS IN: nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Excinuclease ABC, C subunit, N-terminal (InterPro:IPR000305); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Excinuclease ABC, C subunit, N-terminal transcript=eq;prot=eq; - 2 No
BD1G53730 bdi 5'-flap endonuclease activity (Blast2GO) pid=Bradi1g53730.1;tid=Bradi1g53730.1;GeneName=Bradi1g53730;transcript=eq;prot=eq + Bd1 No
CP00002G03010 cpa name=evm.TU.supercontig_2.301;pid=evm.TU.supercontig_2.301;prot=eq;transcript=eq + supercontig_2 No
CR07G08150 cre name=pm.chromosome_7_#_363;pid=337704;prot=eq;tid=337711;transcript=eq + chromosome_7 No
FV3G31630 fve Structure-specific endonuclease subunit SLX1 (probable) transcript=eq;prot=eq;pid=gene28135 + LG3 No
GM11G30050 gma 11 pid=16284955;transcript=eq;prot=eq;name=Glyma11g30050.1 - Gm11 No
GM18G06170 gma 18 pid=16308074;transcript=eq;prot=eq;name=Glyma18g06170.1 + Gm18 No
LJ0G089400 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_029306;name=LjSGA_029306.1 - LjSGA_029306 No
MD00G041600 mdo transcript=eq;prot=eq;pid=MDP0000161810;tid=MDP0000161810;contig=MDC001773.97 + MDC001773.97 No
MD00G329700 mdo transcript=eq;prot=eq;pid=MDP0000128123;tid=MDP0000128123;contig=MDC013938.147 + MDC013938.147 No
MD11G004320 mdo transcript=eq;prot=eq;pid=MDP0000265418;tid=MDP0000265418;contig=MDC002774.357 + 11 No
ME07777G00030 mes PACid=17986909;RNAname=cassava4.1_025163m;GeneName=cassava4.1_025163m.g;transcript=eq;prot=eq - scaffold07777 No
ME07777G00040 mes PACid=17986912;RNAname=cassava4.1_029337m;GeneName=cassava4.1_029337m.g;transcript=eq;prot=eq - scaffold07777 No
MRCC299_06G00600 mrcc299 name=est_cluster_kg.Chr_06__30__3200475:1;pid=108386;prot=eq;tid=108386;transcript=eq + Chr_06 No
OL15G00330 olu NULL name=eugene.1500010034,pid=27712,prot=eq,tid=27712 - Chr_15 No
OS07G12710 osa GIY%2DYIG catalytic domain containing protein, putative, expressed transcript=eq;prot=eq; - 7 No
OSINDICA_07G11120 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC023021; - Chr07 No
OT16G00480 ota GIY-YIG type nuclease (ISS); name=OT16G00480;protein_id=CAL58047.1;prot=eq - chrom16 No
PP00245G00450 ppa NULL name=fgenesh1_pg.scaffold_245000054,pid=93627,prot=eq,tid=93627 + scaffold_245 No
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