Sub-family  

Parent family
HOM000101
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO003443 has 29 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 29 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G06170 aly name=fgenesh1_pg.C_scaffold_4000458;pid=344116;prot=eq;tid=344116 + scaffold_4 No
AL7G09630 aly name=fgenesh1_pm.C_scaffold_7000765;pid=328538;prot=eq;tid=328538 - scaffold_7 No
AT2G25170 ath Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1. Is an extragenic suppressor of slr2 (SSL2). Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1. It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis.;chromatin remodeling factor CHD3 (PICKLE) transcript=eq;prot=eq; + 2 No
AT4G31900 ath PICKLE RELATED 2 (PKR2); FUNCTIONS IN: in 6 functions; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Protein of unknown function DUF1086 (InterPro:IPR009462), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 19383 Blast hits to 16625 proteins in 2121 species: Archae - 158; Bacteria - 5872; Metazoa - 3841; Fungi - 4162; Plants - 1629; Viruses - 186; Other Eukaryotes - 3535 (source: NCBI BLink).;chromatin remodeling factor, putative transcript=eq;prot=eq; + 4 No
BD1G47367 bdi pid=Bradi1g47367.2;tid=Bradi1g47367.2;GeneName=Bradi1g47367;transcript=eq;prot=eq + Bd1 No
CP00127G00130 cpa name=evm.TU.supercontig_127.13;pid=evm.TU.supercontig_127.13;prot=eq;transcript=eq - supercontig_127 No
FV2G52150 fve CHD3-type chromatin-remodeling factor PICKLE (putative) transcript=eq;prot=eq;pid=gene15027 - LG2 No
GM04G06630 gma 04 pid=16255091;transcript=eq;prot=eq;name=Glyma04g06630.1 + Gm04 No
GM06G06720 gma 06 pid=16261966;transcript=eq;prot=eq;name=Glyma06g06720.1 + Gm06 No
GM17G33260 gma 17 pid=16306902;transcript=eq;prot=eq;name=Glyma17g33260.1 - Gm17 No
MD00G360430 mdo transcript=eq;prot=eq;pid=MDP0000712928;tid=MDP0000712928;contig=MDC016154.207 - MDC016154.207 No
ME00847G02140 mes PACid=17985808;RNAname=cassava4.1_002831m;GeneName=cassava4.1_002831m.g;transcript=ne;prot=eq - scaffold00847 No
ME03049G00320 mes PACid=17959881;RNAname=cassava4.1_000224m;GeneName=cassava4.1_000223m.g;transcript=eq;prot=eq - scaffold03049 No
MRCC299_16G02040 mrcc299 name=EuGene.1600010206;pid=64845;prot=eq;tid=64845;transcript=eq + Chr_16 No
MT3G106210 mtr Chromatin remodeling complex subunit (Fragment) (AHRD V1 ***- B9HAU9_POPTR); contains Interpro domain(s) IPR000330 SNF2-related transcript=eq;prot=eq;pid=Medtr3g106210.1; + 3 No
OL01G05770 olu NULL name=e_gwEuk.1.102.1,pid=40372,prot=eq,tid=40372 - Chr_1 No
OS06G08480 osa CHD3%2Dtype chromatin%2Dremodeling factor PICKLE, putative, expressed transcript=eq;prot=eq; - 6 No
OSINDICA_06G07820 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC009691; - Chr06 No
OT01G05510 ota Chromodomain-helicase-DNA-binding protein 6 (ISS); name=OT01G05510;protein_id=CAL50466.1;prot=eq - chrom01 No
PP00033G01850 ppa NULL name=e_gw1.33.19.1,pid=120666,prot=eq,tid=120666 - scaffold_33 No
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