Sub-family  

Parent family
HOM001479
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO003389 has 29 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 29 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G09090 aly name=fgenesh2_kg.3__907__AT3G08980.1;pid=478206;prot=eq;tid=478206 + scaffold_3 No
AT3G08980 ath Peptidase S24/S26A/S26B/S26C family protein; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain (InterPro:IPR011056), Peptidase S24/S26A/S26B, conserved region (InterPro:IPR019759), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I (InterPro:IPR000223); BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT1G53530.1); Has 4114 Blast hits to 4113 proteins in 1108 species: Archae - 0; Bacteria - 2962; Metazoa - 240; Fungi - 231; Plants - 274; Viruses - 0; Other Eukaryotes - 407 (source: NCBI BLink).;Peptidase S24/S26A/S26B/S26C family protein transcript=eq;prot=eq; + 3 No
BD1G75200 bdi pid=Bradi1g75200.1;tid=Bradi1g75200.1;GeneName=Bradi1g75200;transcript=eq;prot=eq - Bd1 No
BD5G00590 bdi endopeptidase activity, serine-type peptidase activity (Blast2GO) pid=Bradi5g00590.1;tid=Bradi5g00590.1;GeneName=Bradi5g00590;transcript=eq;prot=eq + Bd5 No
CP00163G00190 cpa name=evm.TU.supercontig_163.19;pid=evm.TU.supercontig_163.19;prot=eq;transcript=eq - supercontig_163 No
CR01G05630 cre name=estExt_gwp_1W.C_10111;pid=136408;prot=eq;tid=136408;transcript=eq + chromosome_1 No
FV6G10580 fve Mitochondrial inner membrane protease subunit 2 (probable) transcript=eq;prot=eq;pid=gene18860 + LG6 No
FV6G24790 fve Mitochondrial inner membrane protease subunit 2 (probable) transcript=eq;prot=eq;pid=gene15855 - LG6 No
GM07G18060 gma 07 pid=16267654;transcript=eq;prot=eq;name=Glyma07g18060.1 - Gm07 No
GM18G42910 gma 18 pid=16310277;transcript=eq;prot=eq;name=Glyma18g42910.1 - Gm18 No
LJ0G420600 lja prot=eq;transcript=eq;scaffold=LjT35D08;name=LjT35D08.80.nd + chr0 No
MD04G012230 mdo transcript=eq;prot=eq;pid=MDP0000757637;tid=MDP0000757637;contig=MDC009757.32 - 4 No
MD12G017360 mdo transcript=eq;prot=eq;pid=MDP0000269897;tid=MDP0000269897;contig=MDC001777.151 - 12 No
ME09086G00070 mes PACid=17980343;RNAname=cassava4.1_017727m;GeneName=cassava4.1_017714m.g;transcript=eq;prot=eq - scaffold09086 No
MRCC299_04G07310 mrcc299 name=gw2.04.680.1;pid=73820;prot=eq;tid=73820;transcript=eq + Chr_04 No
MT5G007850 mtr Mitochondrial inner membrane protease subunit 2 (AHRD V1 ***- Q96T52); contains Interpro domain(s) IPR000223 Peptidase S26A, signal peptidase I transcript=eq;prot=eq;pid=Medtr5g007850.1; + 5 No
OS03G05430 osa peptidase, putative, expressed transcript=eq;prot=eq; + 3 No
OS04G08340 osa OsSigP3 %2D Putative Type I Signal Peptidase homologue%3B employs a putative Ser%2FLys catalytic dyad, expressed transcript=eq;prot=eq; + 4 No
OSINDICA_03G04600 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC005188; + Chr03 No
OSINDICA_04G05300 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC016268; + Chr04 No
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