Sub-family  

Parent family
HOM003352
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO003385 has 29 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 29 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G08200 aly name=Al_scaffold_0003_802;pid=872161;prot=eq;tid=903674 + scaffold_3 No
AT3G07750 ath 3'-5'-exoribonuclease family protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: ribonuclease PH45A (TAIR:AT3G12990.3); Has 1493 Blast hits to 1491 proteins in 343 species: Archae - 294; Bacteria - 54; Metazoa - 354; Fungi - 315; Plants - 185; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink).;3'-5'-exoribonuclease family protein transcript=eq;prot=eq; + 3 No
BD1G27250 bdi 3'-5'-exoribonuclease activity (Blast2GO) pid=Bradi1g27250.1;tid=Bradi1g27250.1;GeneName=Bradi1g27250;transcript=eq;prot=eq + Bd1 No
BD3G17560 bdi 3'-5'-exoribonuclease activity (Blast2GO) pid=Bradi3g17560.1;tid=Bradi3g17560.1;GeneName=Bradi3g17560;transcript=eq;prot=eq - Bd3 No
CP00211G00220 cpa name=evm.TU.supercontig_211.22;pid=evm.TU.supercontig_211.22;prot=eq;transcript=eq + supercontig_211 No
CR03G08260 cre name=OVA_estExt_fgenesh2_pg.C_140073;pid=205556;prot=eq;tid=205561;transcript=eq + chromosome_3 No
GM02G07710 gma 02 pid=16247325;transcript=eq;prot=eq;name=Glyma02g07710.1 + Gm02 No
GM16G26780 gma 16 pid=16303002;transcript=eq;prot=eq;name=Glyma16g26780.1 + Gm16 No
LJ5G006460 lja prot=eq;transcript=eq;scaffold=CM0345;name=chr5.CM0345.130.nc + chr5 No
MD00G244590 mdo transcript=eq;prot=eq;pid=MDP0000149354;tid=MDP0000149354;contig=MDC010551.368 + MDC010551.368 No
MD09G010320 mdo transcript=eq;prot=eq;pid=MDP0000231826;tid=MDP0000231826;contig=MDC004018.303 - 9 No
ME02610G00180 mes PACid=17982889;RNAname=cassava4.1_013249m;GeneName=cassava4.1_013249m.g;transcript=eq;prot=eq + scaffold02610 No
MRCC299_12G00260 mrcc299 name=gw2.12.338.1;pid=71370;prot=eq;tid=71370;transcript=eq - Chr_12 No
MT8G077430 mtr Exosome complex exonuclease RRP42 (AHRD V1 ***- Q15024); contains Interpro domain(s) IPR015847 Exoribonuclease, phosphorolytic domain 2 transcript=eq;prot=eq;pid=Medtr8g077430.1; - 8 No
OL11G02960 olu NULL name=eugene.1100010295,pid=26622,prot=eq,tid=26622 - Chr_11 No
OS12G21500 osa exosome complex exonuclease, putative, expressed transcript=eq;prot=eq; + 12 No
OSINDICA_12G13640 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC032725; + Chr12 No
OT11G03100 ota Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 (ISS); name=OT11G03100;protein_id=CAL55915.1;prot=eq - chrom11 No
PP00162G00160 ppa NULL name=estExt_gwp_gw1.C_1620036,pid=191431,prot=eq,tid=191431 - scaffold_162 No
PT14G16230 ptr PACid=17320908;name=POPTR_0014s16420;alias=pt035950m,estExt_fgenesh4_pm.C_LG_XIV0472; transcript=eq;prot=eq;protein_id=17320908; - scaffold_14 No
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