Sub-family  

Parent family
HOM000101
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO003378 has 29 genes in 21 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 29 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G06040 aly name=Al_scaffold_0003_591;pid=871950;prot=eq;tid=903463 - scaffold_3 No
AL6G19560 aly name=fgenesh2_kg.6__1948__AT5G19310.1;pid=488814;prot=eq;tid=488814 + scaffold_6 No
AT3G06010 ath Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein. AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.;Homeotic gene regulator transcript=eq;prot=eq; - 3 No
AT5G19310 ath Homeotic gene regulator; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1); Has 29243 Blast hits to 22828 proteins in 2261 species: Archae - 168; Bacteria - 6495; Metazoa - 7843; Fungi - 5018; Plants - 2070; Viruses - 244; Other Eukaryotes - 7405 (source: NCBI BLink).;Homeotic gene regulator transcript=eq;prot=eq; + 5 No
BD2G36380 bdi ATP-dependent DNA helicase activity (Blast2GO) pid=Bradi2g36380.1;tid=Bradi2g36380.1;GeneName=Bradi2g36380;transcript=eq;prot=eq + Bd2 No
CP01278G00010 cpa name=evm.TU.supercontig_1278.1;pid=evm.TU.supercontig_1278.1;prot=eq;transcript=eq + supercontig_1278 No
FV4G14830 fve Probable global transcription activator SNF2L2 (hBRM) transcript=eq;prot=eq;pid=gene05900 - LG4 No
GM10G39630 gma 10 pid=16281533;transcript=eq;prot=eq;name=Glyma10g39630.1 - Gm10 No
GM11G00640 gma 11 pid=16282194;transcript=eq;prot=eq;name=Glyma11g00640.1 + Gm11 No
GM20G28120 gma 20 pid=16317100;transcript=eq;prot=eq;name=Glyma20g28120.1 + Gm20 No
LJ5G027590 lja partial;prot=eq;transcript=eq;scaffold=CM0956;name=chr5.CM0956.290.nd + chr5 No
ME01551G02400 mes PACid=17961971;RNAname=cassava4.1_001738m;GeneName=cassava4.1_001738m.g;transcript=eq;prot=eq - scaffold01551 No
ME02912G00250 mes PACid=17972356;RNAname=cassava4.1_000632m;GeneName=cassava4.1_000632m.g;transcript=eq;prot=eq + scaffold02912 No
MRCC299_02G04330 mrcc299 name=EuGene.0200010520;pid=56143;prot=eq;tid=56143;transcript=eq + Chr_02 No
MT1G105050 mtr Chromatin remodeling complex subunit (AHRD V1 **-- B9HJV0_POPTR); contains Interpro domain(s) IPR000330 SNF2-related transcript=eq;prot=eq;pid=Medtr1g105050.1; - 1 No
MT5G005840 mtr Chromatin remodeling complex subunit (AHRD V1 **-- B9HJV0_POPTR); contains Interpro domain(s) IPR000330 SNF2-related transcript=eq;prot=eq;pid=Medtr5g005840.1; + 5 No
OS05G05230 osa expressed protein transcript=eq;prot=eq; - 5 No
OSINDICA_05G04090 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC019650; - Chr05 No
PP00054G01690 ppa NULL name=gw1.54.225.1,pid=40536,prot=eq,tid=40536 + scaffold_54 No
PT08G14740 ptr PACid=17333780;name=POPTR_0008s14930;alias=pt026539m; transcript=eq;prot=eq;protein_id=17333780; + scaffold_8 No
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