Sub-family  

Parent family
HOM000946
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (6 genes)



The gene family ORTHO003356 has 29 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 29 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G16780 aly name=fgenesh2_kg.2__1112__AT1G68580.2;pid=475982;prot=eq;tid=475982 + scaffold_2 No
AT1G68580 ath agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT5G55600.3); Has 284 Blast hits to 251 proteins in 24 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 275; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).;agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein transcript=eq;prot=eq; + 1 No
BD3G36500 bdi pid=Bradi3g36500.1;tid=Bradi3g36500.1;GeneName=Bradi3g36500;transcript=eq;prot=eq + Bd3 No
CP32159G00010 cpa name=evm.TU.contig_32159.1;pid=evm.TU.contig_32159.1;prot=eq;transcript=eq + contig_32159 No
FV0G01870 fve Protein winged eye (probable) transcript=eq;prot=eq;pid=gene03763 + scf0513158 No
GM00G00025 gma 22 pid=16242647;transcript=eq;prot=eq;name=Glyma0022s00420.1 + scaffold_22 No
GM01G20780 gma 01 pid=16244141;transcript=eq;prot=eq;name=Glyma01g20780.1 + Gm01 No
LJ2G012860 lja partial;prot=eq;transcript=eq;scaffold=CM0903;name=chr2.CM0903.390.nd + chr2 No
MD00G012950 mdo transcript=eq;prot=eq;pid=MDP0000235367;tid=MDP0000235367;contig=MDC000532.404 - MDC000532.404 No
MD00G295170 mdo transcript=eq;prot=eq;pid=MDP0000604089;tid=MDP0000604089;contig=MDC012594.470 - MDC012594.470 No
MD00G475300 mdo transcript=eq;prot=eq;pid=MDP0000143447;tid=MDP0000143447;contig=MDC022113.108 - MDC022113.108 No
MD00G475310 mdo transcript=eq;prot=eq;pid=MDP0000245750;tid=MDP0000245750;contig=MDC022113.109 + MDC022113.109 No
ME08359G00220 mes PACid=17969213;RNAname=cassava4.1_002893m;GeneName=cassava4.1_002893m.g;transcript=eq;prot=eq + scaffold08359 No
MT5G055210 mtr Agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein-like (AHRD V1 ***- Q69N36_ORYSJ); contains Interpro domain(s) IPR008395 Agenet transcript=eq;prot=eq;pid=Medtr5g055210.1; - 5 No
OS08G33420 osa agenet domain containing protein, expressed transcript=eq;prot=eq; + 8 No
OSINDICA_08G31470 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC026822; + Chr08 No
PT08G11620 ptr PACid=17332402;name=POPTR_0008s11810;alias=pt026667m,gw1.VIII.2216.1; transcript=eq;prot=eq;protein_id=17332402; - scaffold_8 No
PT10G12520 ptr PACid=17331796;name=POPTR_0010s13660;alias=pt011310m; transcript=eq;prot=eq;protein_id=17331796; + scaffold_10 No
RC28883G00090 rco name=28883.m000719;gene=28883.t000009;note=28883.t000009;transcript=eq;prot=eq + 28883 No
SB07G021050 sbi 7 prot=eq;pid=5058751;tid=5058751 + chr_7 No
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