Sub-family 
- Id
- ORTHO003334
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM003939
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (2 genes)
- ath
- Arabidopsis thaliana (1 gene)
- bdi
- Brachypodium distachyon (1 gene)
- cpa
- Carica papaya (1 gene)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (2 genes)
- lja
- Lotus japonicus (1 gene)
- mdo
- Malus domestica (2 genes)
- mes
- Manihot esculenta (1 gene)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (1 gene)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (1 gene)
- osaindica
- Oryza sativa ssp. indica (1 gene)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (1 gene)
- ptr
- Populus trichocarpa (2 genes)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (3 genes)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (1 gene)
The gene family ORTHO003334 has 29 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : ORTHO003334
Page 1 of 2, showing 20 records out of 29 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G42460 | aly | name=fgenesh2_kg.1__3966__AT1G48760.2;pid=474012;prot=eq;tid=474012 | - | scaffold_1 | No | |
| AL3G19780 | aly | name=fgenesh1_pg.C_scaffold_3001726;pid=341963;prot=eq;tid=341963 | - | scaffold_3 | No | |
| AT1G48760 | ath | delta-adaptin (delta-ADR); FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Adaptor protein complex AP-3, delta subunit (InterPro:IPR017105), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Adaptor protein complex AP-1, gamma subunit (TAIR:AT1G60070.1); Has 3854 Blast hits to 3636 proteins in 331 species: Archae - 0; Bacteria - 22; Metazoa - 1599; Fungi - 800; Plants - 408; Viruses - 0; Other Eukaryotes - 1025 (source: NCBI BLink).;delta-adaptin | transcript=eq;prot=eq; | - | 1 | No |
| BD2G13750 | bdi | pid=Bradi2g13750.1;tid=Bradi2g13750.1;GeneName=Bradi2g13750;transcript=eq;prot=eq | + | Bd2 | No | |
| CP00003G04790 | cpa | name=evm.TU.supercontig_3.479;pid=evm.TU.supercontig_3.479;prot=eq;transcript=eq | - | supercontig_3 | No | |
| FV5G35810 | fve | AP-3 complex subunit delta-1 (probable) | transcript=eq;prot=eq;pid=gene25140 | - | LG5 | No |
| GM05G34740 | gma | 05 | pid=16260708;transcript=eq;prot=eq;name=Glyma05g34740.1 | + | Gm05 | No |
| GM08G04940 | gma | 08 | pid=16269999;transcript=eq;prot=eq;name=Glyma08g04940.1 | - | Gm08 | No |
| LJ6G007120 | lja | prot=eq;transcript=eq;scaffold=CM0057;name=chr6.CM0057.480.nc | + | chr6 | No | |
| MD06G018290 | mdo | transcript=eq;prot=eq;pid=MDP0000314575;tid=MDP0000314575;contig=MDC020877.149 | + | 6 | No | |
| MD14G021380 | mdo | transcript=eq;prot=eq;pid=MDP0000200696;tid=MDP0000200696;contig=MDC012809.95 | + | 14 | No | |
| ME09357G00010 | mes | PACid=17974542;RNAname=cassava4.1_001090m;GeneName=cassava4.1_001090m.g;transcript=eq;prot=eq | - | scaffold09357 | No | |
| MRCC299_09G03550 | mrcc299 | name=EuGene.0900010346;pid=61363;prot=eq;tid=61363;transcript=eq | + | Chr_09 | No | |
| MT8G104380 | mtr | AP-3 complex subunit delta-1 (AHRD V1 *-*- O14617); contains Interpro domain(s) IPR017105 Adaptor protein complex AP-3, delta subunit | transcript=eq;prot=eq;pid=Medtr8g104380.1; | + | 8 | No |
| OL19G00700 | olu | NULL | name=e_gwEuk.19.6.1,pid=42302,prot=eq,tid=42302 | + | Chr_19 | No |
| OS01G32880 | osa | AP%2D3 complex subunit delta, putative, expressed | transcript=eq;prot=eq; | + | 1 | No |
| OSINDICA_01G30360 | osaindica | source=BGI China;type=FgeneSH; | transcript=eq;prot=eq;name=OsIFCC001986; | + | Chr01 | No |
| OT20G00700 | ota | AP3D1 protein (ISS); | name=OT20G00700;protein_id=CAL56719.1;prot=eq | + | chrom20 | No |
| PP00229G00260 | ppa | NULL | name=e_gw1.229.47.1,pid=145585,prot=eq,tid=145585 | - | scaffold_229 | No |
| PT12G04940 | ptr | PACid=17316023;name=POPTR_0012s05130;alias=pt015470m,eugene3.00120459; | transcript=eq;prot=eq;protein_id=17316023; | - | scaffold_12 | No |