Sub-family  

Parent family
HOM003939
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO003334 has 29 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 29 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G42460 aly name=fgenesh2_kg.1__3966__AT1G48760.2;pid=474012;prot=eq;tid=474012 - scaffold_1 No
AL3G19780 aly name=fgenesh1_pg.C_scaffold_3001726;pid=341963;prot=eq;tid=341963 - scaffold_3 No
AT1G48760 ath delta-adaptin (delta-ADR); FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Adaptor protein complex AP-3, delta subunit (InterPro:IPR017105), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Adaptor protein complex AP-1, gamma subunit (TAIR:AT1G60070.1); Has 3854 Blast hits to 3636 proteins in 331 species: Archae - 0; Bacteria - 22; Metazoa - 1599; Fungi - 800; Plants - 408; Viruses - 0; Other Eukaryotes - 1025 (source: NCBI BLink).;delta-adaptin transcript=eq;prot=eq; - 1 No
BD2G13750 bdi pid=Bradi2g13750.1;tid=Bradi2g13750.1;GeneName=Bradi2g13750;transcript=eq;prot=eq + Bd2 No
CP00003G04790 cpa name=evm.TU.supercontig_3.479;pid=evm.TU.supercontig_3.479;prot=eq;transcript=eq - supercontig_3 No
FV5G35810 fve AP-3 complex subunit delta-1 (probable) transcript=eq;prot=eq;pid=gene25140 - LG5 No
GM05G34740 gma 05 pid=16260708;transcript=eq;prot=eq;name=Glyma05g34740.1 + Gm05 No
GM08G04940 gma 08 pid=16269999;transcript=eq;prot=eq;name=Glyma08g04940.1 - Gm08 No
LJ6G007120 lja prot=eq;transcript=eq;scaffold=CM0057;name=chr6.CM0057.480.nc + chr6 No
MD06G018290 mdo transcript=eq;prot=eq;pid=MDP0000314575;tid=MDP0000314575;contig=MDC020877.149 + 6 No
MD14G021380 mdo transcript=eq;prot=eq;pid=MDP0000200696;tid=MDP0000200696;contig=MDC012809.95 + 14 No
ME09357G00010 mes PACid=17974542;RNAname=cassava4.1_001090m;GeneName=cassava4.1_001090m.g;transcript=eq;prot=eq - scaffold09357 No
MRCC299_09G03550 mrcc299 name=EuGene.0900010346;pid=61363;prot=eq;tid=61363;transcript=eq + Chr_09 No
MT8G104380 mtr AP-3 complex subunit delta-1 (AHRD V1 *-*- O14617); contains Interpro domain(s) IPR017105 Adaptor protein complex AP-3, delta subunit transcript=eq;prot=eq;pid=Medtr8g104380.1; + 8 No
OL19G00700 olu NULL name=e_gwEuk.19.6.1,pid=42302,prot=eq,tid=42302 + Chr_19 No
OS01G32880 osa AP%2D3 complex subunit delta, putative, expressed transcript=eq;prot=eq; + 1 No
OSINDICA_01G30360 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC001986; + Chr01 No
OT20G00700 ota AP3D1 protein (ISS); name=OT20G00700;protein_id=CAL56719.1;prot=eq + chrom20 No
PP00229G00260 ppa NULL name=e_gw1.229.47.1,pid=145585,prot=eq,tid=145585 - scaffold_229 No
PT12G04940 ptr PACid=17316023;name=POPTR_0012s05130;alias=pt015470m,eugene3.00120459; transcript=eq;prot=eq;protein_id=17316023; - scaffold_12 No
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