Sub-family 
- Id
- ORTHO003317
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM001137
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (2 genes)
- ath
- Arabidopsis thaliana (2 genes)
- bdi
- Brachypodium distachyon (1 gene)
- cpa
- Carica papaya (1 gene)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (4 genes)
- lja
- Lotus japonicus (2 genes)
- mdo
- Malus domestica (2 genes)
- mes
- Manihot esculenta (2 genes)
- mtr
- Medicago truncatula (2 genes)
- osa
- Oryza sativa ssp. japonica (1 gene)
- osaindica
- Oryza sativa ssp. indica (1 gene)
- ptr
- Populus trichocarpa (2 genes)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (1 gene)
- tca
- Theobroma cacao (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (2 genes)
The gene family ORTHO003317 has 29 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.
Toolbox
Explore
- ...the local gene organization for homologous genes.
- ...the phylogenetic trees of this gene family.
- ...the expansion/depletion of species in this gene family.
View
- ...the multiple sequence alignment of the homologous gene family.
- ...the similarity heatmap of this gene family.
- ...the genome wide organization of this gene family.
- ...the functional annotation associated with this gene family.
Index of genes with 1 constraints:
- gene family : ORTHO003317
Page 1 of 2, showing 20 records out of 29 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G30450 | aly | name=fgenesh2_kg.1__3114__AT1G29520.1;pid=473160;prot=eq;tid=473160 | + | scaffold_1 | No | |
| AL8G01710 | aly | name=fgenesh1_pm.C_scaffold_8000115;pid=330772;prot=eq;tid=330772 | - | scaffold_8 | No | |
| AT1G29520 | ath | AWPM-19-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: AWPM-19-like family protein (TAIR:AT5G46530.1); Has 177 Blast hits to 177 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;AWPM-19-like family protein | transcript=eq;prot=eq; | + | 1 | No |
| AT5G46530 | ath | AWPM-19-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: AWPM-19-like family protein (TAIR:AT1G29520.1); Has 181 Blast hits to 181 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;AWPM-19-like family protein | transcript=eq;prot=eq; | + | 5 | No |
| BD2G47520 | bdi | pid=Bradi2g47520.1;tid=Bradi2g47520.1;GeneName=Bradi2g47520;transcript=eq;prot=eq | + | Bd2 | No | |
| CP00017G01540 | cpa | name=evm.TU.supercontig_17.154;pid=evm.TU.supercontig_17.154;prot=eq;transcript=eq | + | supercontig_17 | No | |
| FV3G08650 | fve | Antigen LPMC-61 (probable) | transcript=eq;prot=eq;pid=gene24880 | - | LG3 | No |
| GM05G29720 | gma | 05 | pid=16260086;transcript=eq;prot=eq;name=Glyma05g29720.1 | - | Gm05 | No |
| GM08G12830 | gma | 08 | pid=16270932;transcript=eq;prot=eq;name=Glyma08g12830.1 | - | Gm08 | No |
| GM09G10510 | gma | 09 | pid=16275399;transcript=eq;prot=eq;name=Glyma09g10510.1 | + | Gm09 | No |
| GM15G23230 | gma | 15 | pid=16299666;transcript=eq;prot=eq;name=Glyma15g23230.1 | + | Gm15 | No |
| LJ4G029280 | lja | prot=eq;transcript=eq;scaffold=CM0046;name=chr4.CM0046.770.nc | - | chr4 | No | |
| LJ6G009510 | lja | prot=eq;transcript=eq;scaffold=CM0037;name=chr6.CM0037.1560.nc | + | chr6 | No | |
| MD00G414210 | mdo | transcript=eq;prot=eq;pid=MDP0000213374;tid=MDP0000213374;contig=MDC018876.221 | + | MDC018876.221 | No | |
| MD05G006480 | mdo | transcript=eq;prot=eq;pid=MDP0000204822;tid=MDP0000204822;contig=MDC012290.160 | - | 5 | No | |
| ME06582G00440 | mes | PACid=17972051;RNAname=cassava4.1_018006m;GeneName=cassava4.1_018006m.g;transcript=eq;prot=eq | - | scaffold06582 | No | |
| ME09120G00260 | mes | PACid=17964093;RNAname=cassava4.1_018043m;GeneName=cassava4.1_018043m.g;transcript=eq;prot=eq | + | scaffold09120 | No | |
| MT2G049340 | mtr | Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008390 AWPM-19-like | transcript=eq;prot=eq;pid=Medtr2g049340.1; | - | 2 | No |
| MT6G068860 | mtr | Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008390 AWPM-19-like | transcript=eq;prot=eq;pid=Medtr6g068860.1; | + | 6 | No |
| OS01G50440 | osa | AWPM%2D19%2Dlike membrane family protein, putative, expressed | transcript=eq;prot=eq; | + | 1 | No |