Sub-family  

Parent family
HOM001137
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO003317 has 29 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 29 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G30450 aly name=fgenesh2_kg.1__3114__AT1G29520.1;pid=473160;prot=eq;tid=473160 + scaffold_1 No
AL8G01710 aly name=fgenesh1_pm.C_scaffold_8000115;pid=330772;prot=eq;tid=330772 - scaffold_8 No
AT1G29520 ath AWPM-19-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: AWPM-19-like family protein (TAIR:AT5G46530.1); Has 177 Blast hits to 177 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;AWPM-19-like family protein transcript=eq;prot=eq; + 1 No
AT5G46530 ath AWPM-19-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: AWPM-19-like family protein (TAIR:AT1G29520.1); Has 181 Blast hits to 181 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;AWPM-19-like family protein transcript=eq;prot=eq; + 5 No
BD2G47520 bdi pid=Bradi2g47520.1;tid=Bradi2g47520.1;GeneName=Bradi2g47520;transcript=eq;prot=eq + Bd2 No
CP00017G01540 cpa name=evm.TU.supercontig_17.154;pid=evm.TU.supercontig_17.154;prot=eq;transcript=eq + supercontig_17 No
FV3G08650 fve Antigen LPMC-61 (probable) transcript=eq;prot=eq;pid=gene24880 - LG3 No
GM05G29720 gma 05 pid=16260086;transcript=eq;prot=eq;name=Glyma05g29720.1 - Gm05 No
GM08G12830 gma 08 pid=16270932;transcript=eq;prot=eq;name=Glyma08g12830.1 - Gm08 No
GM09G10510 gma 09 pid=16275399;transcript=eq;prot=eq;name=Glyma09g10510.1 + Gm09 No
GM15G23230 gma 15 pid=16299666;transcript=eq;prot=eq;name=Glyma15g23230.1 + Gm15 No
LJ4G029280 lja prot=eq;transcript=eq;scaffold=CM0046;name=chr4.CM0046.770.nc - chr4 No
LJ6G009510 lja prot=eq;transcript=eq;scaffold=CM0037;name=chr6.CM0037.1560.nc + chr6 No
MD00G414210 mdo transcript=eq;prot=eq;pid=MDP0000213374;tid=MDP0000213374;contig=MDC018876.221 + MDC018876.221 No
MD05G006480 mdo transcript=eq;prot=eq;pid=MDP0000204822;tid=MDP0000204822;contig=MDC012290.160 - 5 No
ME06582G00440 mes PACid=17972051;RNAname=cassava4.1_018006m;GeneName=cassava4.1_018006m.g;transcript=eq;prot=eq - scaffold06582 No
ME09120G00260 mes PACid=17964093;RNAname=cassava4.1_018043m;GeneName=cassava4.1_018043m.g;transcript=eq;prot=eq + scaffold09120 No
MT2G049340 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008390 AWPM-19-like transcript=eq;prot=eq;pid=Medtr2g049340.1; - 2 No
MT6G068860 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008390 AWPM-19-like transcript=eq;prot=eq;pid=Medtr6g068860.1; + 6 No
OS01G50440 osa AWPM%2D19%2Dlike membrane family protein, putative, expressed transcript=eq;prot=eq; + 1 No
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