Sub-family  

Parent family
HOM000395
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO003256 has 29 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 29 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G02980 aly name=scaffold_5200003.1;pid=920763;prot=eq;tid=952276 + scaffold_52 No
AL8G22560 aly name=scaffold_802253.1;pid=918853;prot=eq;tid=950366 + scaffold_8 No
AT5G56940 ath Ribosomal protein S16 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: mitochondrion, ribosome, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S16 (InterPro:IPR000307); BEST Arabidopsis thaliana protein match is: small subunit ribosomal protein 16 (TAIR:AT4G34620.1); Has 8528 Blast hits to 8528 proteins in 2923 species: Archae - 0; Bacteria - 5438; Metazoa - 128; Fungi - 129; Plants - 517; Viruses - 0; Other Eukaryotes - 2316 (source: NCBI BLink).;Ribosomal protein S16 family protein transcript=eq;prot=eq; + 5 No
BD4G34170 bdi pid=Bradi4g34170.1;tid=Bradi4g34170.1;GeneName=Bradi4g34170;transcript=eq;prot=eq + Bd4 No
CP00128G00070 cpa name=evm.TU.supercontig_128.7;pid=evm.TU.supercontig_128.7;prot=eq;transcript=eq + supercontig_128 No
CR10G02570 cre name=OVA_OVA_estExt_fgenesh2_pg.C_80110;pid=206675;prot=eq;tid=206682;transcript=eq + chromosome_10 No
FV1G09220 fve 30S ribosomal protein S16 (probable) transcript=eq;prot=eq;pid=gene12662 - LG1 No
GM09G07420 gma 09 pid=16275088;transcript=eq;prot=eq;name=Glyma09g07420.1 + Gm09 No
GM15G18610 gma 15 pid=16299228;transcript=eq;prot=eq;name=Glyma15g18610.1 + Gm15 No
LJ0G434120 lja prot=eq;transcript=eq;scaffold=LjT02N03;name=LjT02N03.10.nd - chr0 No
ME00077G00020 mes PACid=17975517;RNAname=cassava4.1_019704m;GeneName=cassava4.1_019704m.g;transcript=eq;prot=eq + scaffold00077 No
ME02906G00070 mes PACid=17963527;RNAname=cassava4.1_018865m;GeneName=cassava4.1_018865m.g;transcript=eq;prot=eq - scaffold02906 No
MRCC299_04G01340 mrcc299 name=gw2.04.711.1;pid=74175;prot=eq;tid=74175;transcript=eq + Chr_04 No
MT2G039750 mtr 30S ribosomal protein S16 (AHRD V1 ***- B3IWG2_MEDTR); contains Interpro domain(s) IPR000307 Ribosomal protein S16 transcript=eq;prot=eq;pid=Medtr2g039750.1; + 2 No
MT5G014070 mtr 30S ribosomal protein S16 (AHRD V1 ***- B3IWG2_MEDTR); contains Interpro domain(s) IPR000307 Ribosomal protein S16 transcript=eq;prot=eq;pid=Medtr5g014070.1; + 5 No
OL12G03140 olu NULL name=e_gwEuk.12.410.1,pid=39161,prot=eq,tid=39161 + Chr_12 No
OS08G40610 osa 30S ribosomal protein S16, putative, expressed transcript=eq;prot=eq; - 8 No
OS09G32274 osa 30S ribosomal protein S16, putative, expressed transcript=eq;prot=eq; + 9 No
OSINDICA_08G39200 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC027316; - Chr08 No
OSINDICA_09G25780 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC029205; + Chr09 No
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