Sub-family  

Parent family
HOM001548
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO003181 has 30 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 30 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G25450 aly name=fgenesh2_kg.7__2557__AT4G17520.1;pid=493124;prot=eq;tid=493124 - scaffold_7 No
AT4G17520 ath Hyaluronan / mRNA binding family; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT5G47210.1); Has 14577 Blast hits to 9436 proteins in 968 species: Archae - 15; Bacteria - 3155; Metazoa - 5443; Fungi - 1433; Plants - 1957; Viruses - 142; Other Eukaryotes - 2432 (source: NCBI BLink).;Hyaluronan / mRNA binding family transcript=eq;prot=eq; + 4 No
BD2G14540 bdi pid=Bradi2g14540.1;tid=Bradi2g14540.1;GeneName=Bradi2g14540;transcript=eq;prot=eq - Bd2 No
CP00022G00630 cpa name=evm.TU.supercontig_22.63;pid=evm.TU.supercontig_22.63;prot=eq;transcript=eq + supercontig_22 No
FV7G12860 fve Histidine-rich glycoprotein, Precursor (probable) transcript=eq;prot=eq;pid=gene04882 - LG7 No
GM09G37850 gma 09 pid=16277566;transcript=eq;prot=eq;name=Glyma09g37850.1 + Gm09 No
GM18G48620 gma 18 pid=16310849;transcript=eq;prot=eq;name=Glyma18g48620.1 - Gm18 No
LJ1G028950 lja prot=eq;transcript=eq;scaffold=LjT29L18;name=chr1.LjT29L18.90.nd - chr1 No
MD00G337790 mdo transcript=eq;prot=eq;pid=MDP0000242538;tid=MDP0000242538;contig=MDC015073.154 - MDC015073.154 No
MD02G021110 mdo transcript=eq;prot=eq;pid=MDP0000377452;tid=MDP0000377452;contig=MDC021974.190 - 2 No
MD07G007950 mdo transcript=eq;prot=eq;pid=MDP0000201462;tid=MDP0000201462;contig=MDC015073.212 + 7 No
ME08265G04320 mes PACid=17988794;RNAname=cassava4.1_009956m;GeneName=cassava4.1_009956m.g;transcript=eq;prot=eq - scaffold08265 No
ME12800G00040 mes PACid=17972941;RNAname=cassava4.1_010194m;GeneName=cassava4.1_010194m.g;transcript=eq;prot=eq + scaffold12800 No
MT7G081660 mtr Transcription factor (AHRD V1 *-*- O04237_VICFA); contains Interpro domain(s) IPR006861 Hyaluronan/mRNA binding protein transcript=eq;prot=eq;pid=Medtr7g081660.1; + 7 No
OS05G51180 osa hyaluronan%2FmRNA binding family domain containing protein, expressed transcript=eq;prot=eq; + 5 No
OSINDICA_05G45420 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC022251; + Chr05 No
PP00022G00100 ppa NULL name=fgenesh1_pm.scaffold_22000005,pid=55884,prot=eq,tid=55884 + scaffold_22 No
PP00045G01500 ppa NULL name=fgenesh1_pg.scaffold_45000161,pid=74147,prot=eq,tid=74147 + scaffold_45 No
PP00045G01510 ppa NULL name=estExt_fgenesh1_pg.C_450162,pid=162649,prot=eq,tid=162649 - scaffold_45 No
PP00097G00900 ppa NULL name=estExt_fgenesh2_pg.C_970090,pid=233711,prot=eq,tid=233711 + scaffold_97 No
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