Sub-family  

Parent family
HOM002067
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO003151 has 30 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 30 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G23670 aly name=scaffold_602455.1;pid=910398;prot=eq;tid=941911 + scaffold_6 No
AL6G23690 aly name=fgenesh2_kg.6__2380__AT5G23880.1;pid=489246;prot=eq;tid=489246 + scaffold_6 No
AT5G23880 ath Encodes a protein similar to the 100kD subunit of cleavage and polyadenylation specificity factor (CPSF), the factor responsible for the recognition of the AAUAAA motif during mRNA polyadenylation. The protein interacts with a portion of a nuclear poly(A) polymerase. It is likely to be a part of the mRNA 3'end formation apparatus.;cleavage and polyadenylation specificity factor 100 transcript=eq;prot=eq; + 5 No
BD2G00840 bdi endoribonuclease activity (Blast2GO) pid=Bradi2g00840.1;tid=Bradi2g00840.1;GeneName=Bradi2g00840;transcript=eq;prot=eq - Bd2 No
BD4G38660 bdi endoribonuclease activity (Blast2GO) pid=Bradi4g38660.1;tid=Bradi4g38660.1;GeneName=Bradi4g38660;transcript=eq;prot=eq - Bd4 No
CP26789G00040 cpa name=evm.TU.contig_26789.4;pid=evm.TU.contig_26789.4;prot=eq;transcript=eq - contig_26789 No
CR12G00930 cre name=OVA_Chlre2_kg.scaffold_11000276;pid=206442;prot=eq;tid=206447;transcript=eq - chromosome_12 No
FV7G38410 fve Cleavage and polyadenylation specificity factor subunit 2 (CPSF 100 kDa subunit) (similar to) transcript=eq;prot=eq;pid=gene13255 - LG7 No
GM11G27560 gma 11 pid=16284799;transcript=eq;prot=eq;name=Glyma11g27560.1 - Gm11 No
LJ2G004200 lja partial;prot=eq;transcript=eq;scaffold=CM0904;name=chr2.CM0904.330.nd - chr2 No
MD06G010250 mdo transcript=eq;prot=eq;pid=MDP0000299766;tid=MDP0000299766;contig=MDC012099.189 - 6 No
MD07G018700 mdo transcript=eq;prot=eq;pid=MDP0000291322;tid=MDP0000291322;contig=MDC009177.321 + 7 No
ME07451G00010 mes PACid=17968734;RNAname=cassava4.1_019342m;GeneName=cassava4.1_019342m.g;transcript=eq;prot=eq - scaffold07451 No
ME07520G00840 mes PACid=17979190;RNAname=cassava4.1_004327m;GeneName=cassava4.1_004327m.g;transcript=eq;prot=eq - scaffold07520 No
MRCC299_01G02950 mrcc299 name=EuGene.0100010332;pid=55105;prot=eq;tid=55105;transcript=eq + Chr_01 No
MRCC299_01G02960 mrcc299 name=EuGene.0100010298;pid=55071;prot=eq;tid=55071;transcript=eq + Chr_01 No
MT1G050920 mtr Cleavage and polyadenylation specificity factor subunit 2 (AHRD V1 ***- Q9LKF9) transcript=eq;prot=eq;pid=Medtr1g050920.1; + 1 No
MT1G051150 mtr Cleavage and polyadenylation specificity factor subunit 2 (AHRD V1 *-*- Q9LKF9); contains Interpro domain(s) IPR007304 TAP42-like protein transcript=eq;prot=eq;pid=Medtr1g051150.1; + 1 No
OL01G02530 olu NULL name=fgenesh1_pm.C_Chr_1000044,pid=12108,prot=eq,tid=12108 + Chr_1 No
OS09G39590 osa metallo%2Dbeta%2Dlactamase, putative, expressed transcript=eq;prot=eq; - 9 No
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