Sub-family  

Parent family
HOM002506
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (1 gene)



The gene family ORTHO003119 has 30 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 30 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G27350 aly name=fgenesh2_kg.5__2135__AT3G57000.1;pid=486143;prot=eq;tid=486143 + scaffold_5 No
AT3G57000 ath nucleolar essential protein-related; CONTAINS InterPro DOMAIN/s: Ribosomal biogenesis, methyltransferase, EMG1/NEP1 (InterPro:IPR005304); Has 1079 Blast hits to 938 proteins in 280 species: Archae - 143; Bacteria - 12; Metazoa - 353; Fungi - 181; Plants - 69; Viruses - 2; Other Eukaryotes - 319 (source: NCBI BLink).;nucleolar essential protein-related transcript=eq;prot=eq; + 3 No
BD3G10610 bdi pid=Bradi3g10610.1;tid=Bradi3g10610.1;GeneName=Bradi3g10610;transcript=eq;prot=eq + Bd3 No
CP01212G00020 cpa name=evm.TU.supercontig_1212.2;pid=evm.TU.supercontig_1212.2;prot=eq;transcript=eq + supercontig_1212 No
CR01G02060 cre name=fgenesh2_pg.C_scaffold_52000008;pid=178371;prot=eq;tid=178371;transcript=eq - chromosome_1 No
FV7G16510 fve Probable ribosome biogenesis protein NEP1 (similar to) transcript=eq;prot=eq;pid=gene14273 - LG7 No
GM11G10520 gma 11 pid=16283378;transcript=eq;prot=eq;name=Glyma11g10520.1 + Gm11 No
GM12G02820 gma 12 pid=16286161;transcript=eq;prot=eq;name=Glyma12g02820.1 + Gm12 No
MD14G009520 mdo transcript=eq;prot=eq;pid=MDP0000178505;tid=MDP0000178505;contig=MDC007283.1038 - 14 No
ME07670G00060 mes PACid=17988057;RNAname=cassava4.1_012926m;GeneName=cassava4.1_012926m.g;transcript=ne;prot=eq - scaffold07670 No
MRCC299_01G05750 mrcc299 name=e_gw2.01.1081.1;pid=77569;prot=eq;tid=77569;transcript=eq + Chr_01 No
MT3G096190 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005304 Ribosomal biogenesis, methyltransferase, EMG1/NEP1 transcript=eq;prot=eq;pid=Medtr3g096190.1; - 3 No
MT4G032390 mtr Multicopy suppressor of ras1 (AHRD V1 ***- Q10107); contains Interpro domain(s) IPR005304 Ribosomal biogenesis, methyltransferase, EMG1/NEP1 transcript=eq;prot=eq;pid=Medtr4g032390.1; + 4 No
OL01G00950 olu NULL name=e_gwEuk.1.559.1,pid=39810,prot=eq,tid=39810 - Chr_1 No
OS02G18830 osa ribosome biogenesis protein NEP1, putative, expressed transcript=eq;prot=eq; + 2 No
OSINDICA_02G17750 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC013402; + Chr02 No
OT18G01810 ota putative nucleolar essential protein (ISS); name=OT18G01810;protein_id=CAL58628.1;prot=eq + chrom18 No
PP00016G01540 ppa NULL name=gw1.16.228.1,pid=46413,prot=eq,tid=46413 - scaffold_16 No
PT06G03710 ptr PACid=17318058;name=POPTR_0006s03900;alias=pt018371m,estExt_fgenesh4_pm.C_LG_VI0124; transcript=eq;prot=eq;protein_id=17318058; + scaffold_6 No
PT16G03510 ptr PACid=17315348;name=POPTR_0016s03700;alias=pt003319m; transcript=eq;prot=eq;protein_id=17315348; + scaffold_16 No
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