Sub-family  

Parent family
HOM000231
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO003048 has 30 genes in 21 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 30 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G05070 aly name=fgenesh2_kg.4__383__AT2G24640.1;pid=481323;prot=eq;tid=481323 - scaffold_4 No
AL7G09920 aly name=fgenesh2_kg.7__1006__AT4G31670.1;pid=491573;prot=eq;tid=491573 + scaffold_7 No
AT2G24640 ath ubiquitin-specific protease 19 (UBP19); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 18 (TAIR:AT4G31670.1); Has 10197 Blast hits to 8718 proteins in 376 species: Archae - 10; Bacteria - 271; Metazoa - 4969; Fungi - 1754; Plants - 1124; Viruses - 12; Other Eukaryotes - 2057 (source: NCBI BLink).;ubiquitin-specific protease 19 transcript=eq;prot=eq; - 2 No
AT4G31670 ath ubiquitin-specific protease 18 (UBP18); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 19 (TAIR:AT2G24640.1); Has 9064 Blast hits to 8065 proteins in 324 species: Archae - 2; Bacteria - 451; Metazoa - 4433; Fungi - 1481; Plants - 999; Viruses - 9; Other Eukaryotes - 1689 (source: NCBI BLink).;ubiquitin-specific protease 18 transcript=eq;prot=eq; - 4 No
BD1G31187 bdi pid=Bradi1g31187.1;tid=Bradi1g31187.1;GeneName=Bradi1g31187;transcript=eq;prot=eq - Bd1 No
CP00023G00370 cpa name=evm.TU.supercontig_23.37;pid=evm.TU.supercontig_23.37;prot=eq;transcript=eq - supercontig_23 No
FV2G36860 fve Ubiquitin carboxyl-terminal hydrolase 18 (AtUBP18) (similar to) transcript=eq;prot=eq;pid=gene08678 - LG2 No
GM04G06170 gma 04 pid=16255036;transcript=eq;prot=eq;name=Glyma04g06170.1 - Gm04 No
GM06G06170 gma 06 pid=16261897;transcript=eq;prot=eq;name=Glyma06g06170.1 - Gm06 No
GM14G12360 gma 14 pid=16295264;transcript=eq;prot=eq;name=Glyma14g12360.1 + Gm14 No
GM17G33650 gma 17 pid=16306942;transcript=eq;prot=eq;name=Glyma17g33650.1 - Gm17 No
LJ1G020180 lja prot=eq;transcript=eq;scaffold=CM0133;name=chr1.CM0133.1140.nd - chr1 No
LJ5G005610 lja prot=eq;transcript=eq;scaffold=CM0040;name=chr5.CM0040.360.nc - chr5 No
MD08G004830 mdo transcript=eq;prot=eq;pid=MDP0000278373;tid=MDP0000278373;contig=MDC008011.219 - 8 No
ME00847G02690 mes PACid=17985781;RNAname=cassava4.1_002679m;GeneName=cassava4.1_002679m.g;transcript=eq;prot=eq + scaffold00847 No
ME03049G00800 mes PACid=17959857;RNAname=cassava4.1_003151m;GeneName=cassava4.1_003151m.g;transcript=eq;prot=eq + scaffold03049 No
MRCC299_12G01980 mrcc299 name=e_gw2.12.217.1;pid=86917;prot=eq;tid=86917;transcript=eq + Chr_12 No
OS06G44380 osa ubiquitin carboxyl%2Dterminal hydrolase family protein, expressed transcript=eq;prot=eq; - 6 No
OSINDICA_06G40320 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC011697; - Chr06 No
OT11G02170 ota probable ubiquitin carboxyl terminal hydrolase (ISS); name=OT11G02170;protein_id=CAL55822.1;prot=eq + chrom11 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier