Sub-family  

Parent family
HOM000818
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO002994 has 30 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 30 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G01280 aly name=scaffold_300154.1;pid=896184;prot=eq;tid=927697 + scaffold_3 No
AL6G15460 aly name=fgenesh2_kg.6__1540__AT5G15610.2;pid=488406;prot=eq;tid=488406 + scaffold_6 No
AT3G02200 ath Proteasome component (PCI) domain protein; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: Proteasome component (PCI) domain protein (TAIR:AT5G15610.2); Has 657 Blast hits to 657 proteins in 209 species: Archae - 0; Bacteria - 2; Metazoa - 271; Fungi - 161; Plants - 136; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).;Proteasome component (PCI) domain protein transcript=eq;prot=eq; + 3 No
AT5G15610 ath Proteasome component (PCI) domain protein; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: Proteasome component (PCI) domain protein (TAIR:AT3G02200.2); Has 426 Blast hits to 426 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 114; Plants - 66; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).;Proteasome component (PCI) domain protein transcript=eq;prot=eq; + 5 No
BD5G02340 bdi pid=Bradi5g02340.1;tid=Bradi5g02340.1;GeneName=Bradi5g02340;transcript=eq;prot=eq + Bd5 No
CP00014G01980 cpa name=evm.TU.supercontig_14.198;pid=evm.TU.supercontig_14.198;prot=eq;transcript=eq + supercontig_14 No
FV6G42270 fve Eukaryotic translation initiation factor 3 subunit M (eIF3m) (probable) transcript=eq;prot=eq;pid=gene04249 - LG6 No
GM10G28080 gma 10 pid=16280174;transcript=eq;prot=eq;name=Glyma10g28080.1 + Gm10 No
GM13G06410 gma 13 pid=16289843;transcript=eq;prot=eq;name=Glyma13g06410.1 + Gm13 No
GM20G22090 gma 20 pid=16316400;transcript=eq;prot=eq;name=Glyma20g22090.1 + Gm20 No
LJ0G329390 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_116354;name=LjSGA_116354.1 - LjSGA_116354 No
MD09G004940 mdo transcript=eq;prot=eq;pid=MDP0000253475;tid=MDP0000253475;contig=MDC020813.184 + 9 No
MD17G005240 mdo transcript=eq;prot=eq;pid=MDP0000146197;tid=MDP0000146197;contig=MDC000935.618 + 17 No
ME04043G01960 mes PACid=17987576;RNAname=cassava4.1_008669m;GeneName=cassava4.1_008669m.g;transcript=eq;prot=eq - scaffold04043 No
ME06609G00070 mes PACid=17983529;RNAname=cassava4.1_008674m;GeneName=cassava4.1_008674m.g;transcript=eq;prot=eq + scaffold06609 No
MRCC299_06G01600 mrcc299 name=EuGene.0600010168;pid=59166;prot=eq;tid=59166;transcript=eq - Chr_06 No
OL12G01690 olu NULL name=fgenesh1_pg.C_Chr_12000122,pid=17590,prot=eq,tid=17590 + Chr_12 No
OS04G01290 osa proteasome subunit, putative, expressed transcript=eq;prot=eq; - 4 No
OSINDICA_04G00310 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC015997; - Chr04 No
OT12G01570 ota proteasome family protein (ISS); name=OT12G01570;protein_id=CAL57247.1;prot=eq - chrom12 No
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