Sub-family  

Parent family
HOM000284
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (1 gene)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (11 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family ORTHO002990 has 30 genes in 14 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 30 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G29700 aly name=scaffold_203060.1;pid=895986;prot=eq;tid=927499 - scaffold_2 No
AL5G01530 aly name=fgenesh1_pg.C_scaffold_5000122;pid=346730;prot=eq;tid=346730 - scaffold_5 No
AT1G80110 ath phloem protein 2-B11 (PP2-B11); FUNCTIONS IN: carbohydrate binding; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: phloem protein 2-B12 (TAIR:AT5G24560.1); Has 567 Blast hits to 552 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 567; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;phloem protein 2-B11 transcript=eq;prot=eq; + 1 No
AT2G02360 ath phloem protein 2-B10 (PP2-B10); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G02240.1); Has 572 Blast hits to 558 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 567; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;phloem protein 2-B10 transcript=eq;prot=eq; - 2 No
BD3G55020 bdi F-Box pid=Bradi3g55020.1;tid=Bradi3g55020.1;GeneName=Bradi3g55020;transcript=eq;prot=eq + Bd3 No
GM10G31260 gma 10 pid=16280563;transcript=eq;prot=eq;name=Glyma10g31260.1 + Gm10 No
LJ0G452360 lja prot=eq;transcript=eq;scaffold=LjT15D07;name=LjT15D07.50.nc + chr0 No
ME06853G00040 mes PACid=17960937;RNAname=cassava4.1_013808m;GeneName=cassava4.1_013808m.g;transcript=eq;prot=eq - scaffold06853 No
MT0G35490 mtr F-box protein PP2-B1 (AHRD V1 ***- Q6NPT8) transcript=eq;prot=eq;pid=AC235674_14.1; - AC235674.3 No
MT0G35530 mtr F-box protein PP2-B1 (AHRD V1 ***- Q6NPT8) transcript=eq;prot=eq;pid=AC235674_18.1; + AC235674.3 No
MT1G079180 mtr F-box protein PP2-B1 (AHRD V1 ***- Q6NPT8) transcript=eq;prot=eq;pid=Medtr1g079180.1; - 1 No
MT1G079200 mtr F-box protein PP2-B1 (AHRD V1 ***- Q6NPT8); contains Interpro domain(s) IPR001810 Cyclin-like F-box transcript=eq;prot=eq;pid=Medtr1g079200.1; - 1 No
MT1G079230 mtr F-box protein PP2-B1 (AHRD V1 ***- Q6NPT8); contains Interpro domain(s) IPR001810 Cyclin-like F-box transcript=eq;prot=eq;pid=Medtr1g079230.1; - 1 No
MT1G079250 mtr F-box protein PP2-B3 (AHRD V1 *-*- Q570N1); contains Interpro domain(s) IPR001810 Cyclin-like F-box transcript=eq;prot=eq;pid=Medtr1g079250.1; - 1 No
MT1G079260 mtr F-box protein PP2-B1 (AHRD V1 ***- Q6NPT8); contains Interpro domain(s) IPR001810 Cyclin-like F-box transcript=eq;prot=eq;pid=Medtr1g079260.1; - 1 No
MT1G079370 mtr F-box protein PP2-B1 (AHRD V1 ***- Q6NPT8); contains Interpro domain(s) IPR001810 Cyclin-like F-box transcript=eq;prot=eq;pid=Medtr1g079370.1; - 1 No
MT1G079380 mtr F-box family protein-like (AHRD V1 ***- Q6K3F5_ORYSJ) transcript=eq;prot=eq;pid=Medtr1g079380.1; - 1 No
MT1G079460 mtr F-box protein PP2-B1 (AHRD V1 ***- Q6NPT8) transcript=eq;prot=eq;pid=Medtr1g079460.1; + 1 No
MT1G079850 mtr F-box protein PP2-B3 (AHRD V1 *-*- Q570N1); contains Interpro domain(s) IPR001810 Cyclin-like F-box transcript=eq;prot=eq;pid=Medtr1g079850.1; - 1 No
OS02G56840 osa OsFBX70 %2D F%2Dbox domain containing protein, expressed transcript=eq;prot=eq; + 2 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier